BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0609.p (683 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980885|ref|YP_001354556.1| sodium:solute symporter family ... 951 0.0 gi|152981066|ref|YP_001352589.1| sodium/solute symporter family ... 96 6e-21 >gi|152980885|ref|YP_001354556.1| sodium:solute symporter family protein [Janthinobacterium sp. Marseille] Length = 679 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/683 (71%), Positives = 578/683 (84%), Gaps = 4/683 (0%) Query: 1 MESNQNFFRRLCRYYGFYTLGFIAFLCVLALLEREGMPRSWIGYLFLFVTIGLYAGIGVV 60 M + FF+RLCRYY YT+GF+ FL +A+LE EG PR WIGY+F+F TI +YA IGV+ Sbjct: 1 MTKAKTFFQRLCRYYLLYTVGFVLFLFGVAILEHEGFPRVWIGYVFMFSTIVVYATIGVI 60 Query: 61 CRTSDVPEYYVAGRRVPPLFNGMATAADWISAATFISLAGGLYLQGFDGLAYILGWTGGY 120 RTSDV EYYVAGRRVP FNGMATAADWISAA+FISLAGGLYL GFDGLAYI+GWTGG+ Sbjct: 61 SRTSDVLEYYVAGRRVPAFFNGMATAADWISAASFISLAGGLYLWGFDGLAYIMGWTGGF 120 Query: 121 CLVALLIAPYLRKFGQYTVADFLAARYPGRPGSYGANLIRILAVAATILISFTYVVAQIY 180 LVALLIAPYLRKFGQYT+ D+LAARY G+ Y N++R++AV ATI++SFTYVVAQIY Sbjct: 121 VLVALLIAPYLRKFGQYTIPDYLAARYTGQ---YSTNVVRVIAVIATIIVSFTYVVAQIY 177 Query: 181 GVGLITSRFTGIDFSIGIFLGLASILVCSFLGGMRAITWTQVAQYIIILLAYLIPVIWLS 240 GVGLITSRFTG+DFS+GIFLGLASILVCSFLGGMRA+TWTQVAQYII+++AY+IPV+WLS Sbjct: 178 GVGLITSRFTGVDFSVGIFLGLASILVCSFLGGMRAVTWTQVAQYIILIIAYMIPVVWLS 237 Query: 241 AKHASVPFPPVAYGAVLPKLSALEHKLEDDPKEKEVRRIFQTRADDYAQRLKNLPQSWAD 300 KH ++P PP+AYG+ + +L+ E L DDPKEKEVR IF+ RA D RL +LP+SW + Sbjct: 238 MKHTNMPVPPIAYGSAIAQLTEREKVLIDDPKEKEVRAIFRQRAYDLDDRLASLPESWEN 297 Query: 301 GRVEAQNQADQIRRDTHASLAEIKAASRALAAYPKSPEEAQRKWSEARAANLARAQPPVS 360 GR E Q+ + ++ +A+L +IK R LAAYP+ +EA+R W E RA NL A+PP Sbjct: 298 GRAEIQHNLEALKLG-NAALQDIKQTGRELAAYPRDADEAERVWKEERALNLELAKPPTR 356 Query: 361 QTDPFPGRDKSSSDIKRNNFLALVFCLMLGTAALPHILMRYYTTPTVAGARSSVFWTLFF 420 T+PFPG + +S+IKRNNFLALVFCLMLGTAALPH+L+RYYTTP+V AR SV WTLFF Sbjct: 357 HTEPFPGDSEEASNIKRNNFLALVFCLMLGTAALPHVLVRYYTTPSVKEARHSVAWTLFF 416 Query: 421 IMLIYLTVPALAVLVKYDIYTSLVGSSYSHLPDWVYYWANMDKLNPLVSINDLNRDGVVQ 480 IM +Y+T+PALAVLVKYDIY+SLVGS++S LP+WV YWAN+DKL+PLVSIND+NRDG+VQ Sbjct: 417 IMALYITIPALAVLVKYDIYSSLVGSNFSQLPEWVSYWANIDKLHPLVSINDVNRDGIVQ 476 Query: 481 LGEVSMDGDIIVLAMPEIAGLPYFVSGLVAAGGLAAALSTADGLLLTISNALSHDIYYKV 540 L E+ MD DI+VLA PEIAGLPY +SGL+AAGGLAAALSTADGLLLTISNALSHDIYYK Sbjct: 477 LAEIVMDVDIVVLATPEIAGLPYVISGLIAAGGLAAALSTADGLLLTISNALSHDIYYKT 536 Query: 541 VDPSASTQKRVTISKLLLLVVALLAAYAASLKPGDILSMVGAAFSLAASTLFPALVLGVF 600 VDP ASTQKRVT+SKLLLL+VAL+AAY AS+KPGDILS+VGAAFSLAAS LFPAL LGVF Sbjct: 537 VDPEASTQKRVTVSKLLLLMVALVAAYVASMKPGDILSLVGAAFSLAASALFPALALGVF 596 Query: 601 WKRANQPGAVAGIVCGFLMCVYYMLHTNPAFGGSAAGQWFHIAPISAGIFGVPVGMAAMV 660 WKRANQ GA+AG++ GF +C YYM+HT PAFGGSAAGQWF+IAPISAG+FGVP G A++ Sbjct: 597 WKRANQQGAIAGMLVGFSVCAYYMIHTLPAFGGSAAGQWFNIAPISAGVFGVPAGFCAII 656 Query: 661 IVSLLTPPPDEATVALIDHIRTP 683 +VSLLT PD+ T L+ H+R+P Sbjct: 657 MVSLLTRAPDQRTEDLLKHLRSP 679 >gi|152981066|ref|YP_001352589.1| sodium/solute symporter family protein [Janthinobacterium sp. Marseille] Length = 508 Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 12/191 (6%) Query: 62 RTSDVPEYYVAGRRVPPLFNGMATAADWISAATFISLAGGLYLQGFDGLAYILGWTGGYC 121 RT+ E+Y AG + NG A A DW+SAA F+ G L G DG Y + + Sbjct: 26 RTNTTSEFYAAGGNLSAKENGFALAGDWMSAAAFLGFTGLTALYGMDGSLYAVSALAAFL 85 Query: 122 LVALLIAPYLRKFGQYTVADFLAARYPGRPGSYGANLIRILAVAATILISFTYVVAQIYG 181 L+ +++A +R G+YT+ D +A R RP + R+ AV T +++ Y++ Q+ G Sbjct: 86 LILMVVAEPIRNTGRYTLGDVIAYRMQ-RPQA------RLAAVVGTAIVNLAYMIPQLAG 138 Query: 182 VGLITSRFTGIDFSIG-IFLGLASILVCSFLGGMRAITWTQVAQYIIILLAYLIPVIWLS 240 G + G+ +S IF+G+ ++ F GGM A TW Q+ + +++L + V WL Sbjct: 139 AGALMKLLLGVPYSTAVIFVGIGMVVYVRF-GGMIATTWVQIIKAVLLLATATVLVTWLL 197 Query: 241 AKHASVPFPPV 251 A+ V F P+ Sbjct: 198 AE---VGFNPL 205 Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 40/287 (13%) Query: 382 ALVFCLMLGTAALPHILMRYYTTPTVAGARSSVFWTLFFIMLIYLTVPALAVLVKYDIYT 441 +L L++GTA LPHI+ R++T P AR SV W +F +L T Sbjct: 234 SLSLSLIVGTAGLPHIMTRFFTVPDAKTARKSVIWLMFLAGSFFLA-------------T 280 Query: 442 SLVGSSYSHLPDWVYYWANMDKLNPLVSINDLNRDGVVQLGEVSMDGDIIVLAMPEIAGL 501 +L+G + + + D +I +++ G + L ++ L + Sbjct: 281 TLIGFAAA-------IFVGQD------AIRAVDKGGNLALPLLAQT-----LGGGAGSIG 322 Query: 502 PYFVSGLVAAGGLAAALSTADGLLLTISNALSHDIYYKVV-DPSASTQKRVTISKLLLLV 560 +V A A L+ GL L S ++HD+Y V+ S +V ++KL L Sbjct: 323 GEIFLAIVCAVAFATILAVVAGLTLATSGTVAHDLYVNVIRQGKVSEADQVRVAKLSTLA 382 Query: 561 VALLAAYAASLKPG-DILSMVGAAFSLAASTLFPALVLGVFWKRANQPGAVAGIVCGFLM 619 + +A L G ++ +V A S+AAS FP +VL +FW+R N G + GI G L+ Sbjct: 383 IGAIATALGLLAEGVNVAVLVILAISIAASANFPVIVLSLFWRRFNTAGVIGGITVG-LV 441 Query: 620 CVYYMLHTNPAFGGSAAGQWFHIAPI-SAGIFGVPVGMAAMVIVSLL 665 + PAF G AA I PI + I +P+G+ V+ + L Sbjct: 442 SAAGLAFIGPAFMGKAA-----IFPIVNPTILSLPLGLLGAVVGTFL 483 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,559,310 Number of extensions: 64830 Number of successful extensions: 278 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 3 Length of query: 683 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 593 Effective length of database: 888,291 Effective search space: 526756563 Effective search space used: 526756563 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)