BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0608.p
         (311 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981805|ref|YP_001354559.1| hypothetical protein mma_2869 [...   110   2e-25

>gi|152981805|ref|YP_001354559.1| hypothetical protein mma_2869
           [Janthinobacterium sp. Marseille]
          Length = 268

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 131/292 (44%), Gaps = 32/292 (10%)

Query: 9   IHHQTTYQYSLPVRLSHQVLHLTPRELPWQHCLSHTVDVLPAPHLVRSYEDNFGNVIKTF 68
           I H+T Y+Y+ P+  + Q L LTPR    QH LS  ++     H   ++ D +GN     
Sbjct: 5   IRHETLYRYTSPLTYTIQQLRLTPRVETHQHTLSWAIETSGQRH---AFTDAYGNQCHML 61

Query: 69  SLDTDHTSLDVQADSWVALTPRGQPQEVMRWDEAVTLMAYRGGQLMAPGMLEASNFLFES 128
           ++   H ++ +     V         EVM  D          G+L   G L    F   +
Sbjct: 62  TITGSHDAVRIVVAGEV---------EVMSLDR---------GRLQENGALSPLVFTVPT 103

Query: 129 SHVRIKREFIRYAAECFGPGMSVVEGVRALMLRIHEEFTFDPAATTVSTPVTEVFVNRRG 188
             +    +FI   AE    G S  E ++ L   I     +   AT V++   +     +G
Sbjct: 104 -RLTAATDFICSFAEQNLRGTSSEELLK-LAAAICGAVAYQSGATAVTSTANDALQLGQG 161

Query: 189 VCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQERLIGADASHAWVSVYCPGVDGTQG 248
           VCQD AHL ++C  +  +  RYVSGY+ +      E       SHAWV V+   +D T  
Sbjct: 162 VCQDHAHLFIACCHTRNIPVRYVSGYIDSGSTGHAE-------SHAWVDVWVEELDFT-- 212

Query: 249 SWIDADPTNGIFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300
            W+  D T+  F   +H  L   RD+   +P+ GV  GGG++S+ V+V V+P
Sbjct: 213 GWVSIDVTHACFASDAHCRLAVARDYDSAAPVSGVRRGGGEESLDVSVKVVP 264


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 798,482
Number of extensions: 34832
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 228
Effective length of database: 914,170
Effective search space: 208430760
Effective search space used: 208430760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)