BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0607.p
         (833 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980947|ref|YP_001354557.1| hypothetical protein mma_2867 [...   286   3e-78

>gi|152980947|ref|YP_001354557.1| hypothetical protein mma_2867
           [Janthinobacterium sp. Marseille]
          Length = 471

 Score =  286 bits (732), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 6/470 (1%)

Query: 16  YDEM-LAADGRLRPHWRTLIDQLENLSPEMLRRRATEVRDAIASDGVTYNVYADPKGANR 74
           +DEM +     +R H+R     L   SP+ + R+  E        G+T+ VY +  G  R
Sbjct: 5   FDEMYIDGASNVRDHYREFEAWLATQSPKTVARKRAEADLIFRRVGITFAVYGNEAGTER 64

Query: 75  PWELDLLPHLVSSEEWDFLERAVAQRARLMNGLLADIYGPQSLIAEGLLPPALVFGQHGY 134
               D++P ++++ EW  +E  + QR R +N  + DIY  Q+++  G++PP  +F    Y
Sbjct: 65  VIPFDIIPRMITAREWAHMEAGLVQRVRTLNMFIHDIYHDQNIVKAGIIPPEQIFRNAQY 124

Query: 135 LMPCHGWQPPGGVHLHAYAIDLARSADGTWWVVSDRTQGPSGTGYALQNRQIMARAMPEA 194
                G      ++ H   +D+ R+  G ++V+ D  + PSG  Y L++R++M R  PE 
Sbjct: 125 RPEMQGISVASDIYAHIAGVDIVRAGQGEFYVLEDNLRVPSGVSYMLEDRKMMMRLFPEL 184

Query: 195 LRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYSEHAFLAHTLGFPLV 254
                V     Y   L   L  +AP     P +V++TPG YN  Y EHAFLA  +G  LV
Sbjct: 185 FARHQVAPVAHYPDMLLDNLRSVAPIGVTDPTVVVMTPGMYNSAYFEHAFLAQQMGVELV 244

Query: 255 EGVDLTVRSDQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSALGVPGLTQAARLGNV 314
           EG DL V  + V+++T  G +RV  I RR+DDDY DPL  RADS LGVPGL    R G V
Sbjct: 245 EGQDLFVNDNAVYMRTTRGPKRVDVIYRRIDDDYMDPLAFRADSTLGVPGLLSVYRSGRV 304

Query: 315 VVANSLGSGVLESTALHGFLPAINERLYGESLLLPSVASWWCGEKPALDYTLAHIDELVI 374
            +AN++G+GV +  +++ F+P +      E  +L +V ++ C +K  L Y LA++ ELV+
Sbjct: 305 TLANAIGTGVADDKSIYPFVPDMVRFYLSEEPILNNVPTYQCRKKDELSYVLANLAELVV 364

Query: 375 VPAFSSMRMQPVFGHTLTGAARRRLIESLQLQPHAYAAQEWVRLSQAPVMSRSGDYRLMN 434
                +     + G   T A      + +  +P  Y AQ  + LS  P    SG   +  
Sbjct: 365 KEVHGAGGYGMLVGPASTKAEIENFRQRIIARPDGYIAQPTLALSACPTFVDSG---VAP 421

Query: 435 RTISLRVFAVADGEGGYQVMPGGLTRVAPRQRRDVVSMQQGGTSKDVWVL 484
           R I LR F ++       ++PGGLTRVA ++   VV+  QGG +KD W+L
Sbjct: 422 RHIDLRPFVLSGKT--ISMVPGGLTRVALKEGSLVVNSSQGGGTKDTWIL 469


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,973,699
Number of extensions: 82383
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 1
Length of query: 833
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 742
Effective length of database: 884,594
Effective search space: 656368748
Effective search space used: 656368748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)