BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0605.p
         (408 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate depo...   361   e-101

>gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate
           depolymerase [Janthinobacterium sp. Marseille]
          Length = 411

 Score =  361 bits (926), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/408 (43%), Positives = 251/408 (61%), Gaps = 6/408 (1%)

Query: 5   YQLYQNYADATDPLRACARLMAPLLGTTWPGVPVNPYLRKMASACEVFARTQLTHVRPPF 64
           YQL++      +PL   A   + L           P+ + +A+  E+  R    + +P F
Sbjct: 3   YQLHELNRSLLNPLIQWAEASSKLFSDPVSPFAYTPFAQPIAAGYELMYRLGKDYAKPHF 62

Query: 65  GLGEMVDGERTITVHEEEISGTPFCGLLHFRKE------NAVNQPKVLVVAPMSGHFATL 118
            +  +    + + + EE      FC LLHF+K+       A+ QP +L+VAP+SGH ATL
Sbjct: 63  DISSVNIKGKDVKIIEEVAEEKSFCTLLHFKKDMSAKAYAALKQPTILLVAPLSGHHATL 122

Query: 119 LRGTVKTLLRDHDVYITDWRNARDIALAHGRFGLDEYVSHVIDFLDVLGPGAHLLAVCQP 178
           LR TV++LL +HDVYITDWR+AR + L  G F L +Y+ ++ DF+  LGP  H+++VCQP
Sbjct: 123 LRDTVRSLLVEHDVYITDWRDARMVPLTEGPFHLHDYIYYIQDFIRQLGPNLHVISVCQP 182

Query: 179 TVAALTAAAVMAEADHPAQPRTMTLMAGPLDTRVNPTAVNALAKSKPMAWFEKNMISTVP 238
           TV  L A ++MA    P  P++MT+M GP+D R +PT VN LA  KP +WFE  +I +VP
Sbjct: 183 TVPVLAAISLMASERDPHLPKSMTMMGGPIDPRKSPTQVNNLATEKPYSWFENQVIHSVP 242

Query: 239 ARHAGGGRRVYPGFVQLSAFMNMNLNRHIEAFRKLYHHLVEGEEAQAAQIKDFYEEYFAM 298
           A + G GR+VYPGF+Q + F+ MN  RH ++    Y HL EG+   A + + FY+EY A+
Sbjct: 243 ASYPGFGRKVYPGFLQHAGFIAMNPGRHAQSHWDFYMHLREGDNESAEEHRKFYDEYNAV 302

Query: 299 SDLPAEFYLETVRLVFQEHALPLGKLSYGPHLVNPRAIRRTALFTIEGEKDDICAVGQTV 358
            D+PAE+YLET++ VFQEH LPLG       LV P+ I+  ALFTIEGE+DDI  +GQT 
Sbjct: 303 LDMPAEYYLETIKTVFQEHRLPLGTWEVEGKLVKPQDIKSVALFTIEGERDDISGLGQTH 362

Query: 359 AAQEMCSNIRPYMRMHHVQTAVGHYGVFNGRRWENEIYPRLRDFINMH 406
           AAQ++CS+I    +        GHYG+F+GR+W   I P++ DFI  H
Sbjct: 363 AAQDLCSSIAKSNKQQFTAPQCGHYGIFSGRKWREIICPKITDFIAKH 410


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 957,565
Number of extensions: 38651
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 323
Effective length of database: 906,776
Effective search space: 292888648
Effective search space used: 292888648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)