BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0602.p
         (475 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980947|ref|YP_001354557.1| hypothetical protein mma_2867 [...   841   0.0  

>gi|152980947|ref|YP_001354557.1| hypothetical protein mma_2867
           [Janthinobacterium sp. Marseille]
          Length = 471

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/475 (84%), Positives = 436/475 (91%), Gaps = 4/475 (0%)

Query: 1   MAHFFDEMYSAGASSEAGQVRQHYAEFASWLSAQSPEVIARKRAESDLIFRRVGITFAVY 60
           M  FFDEMY  GAS+    VR HY EF +WL+ QSP+ +ARKRAE+DLIFRRVGITFAVY
Sbjct: 1   MRKFFDEMYIDGASN----VRDHYREFEAWLATQSPKTVARKRAEADLIFRRVGITFAVY 56

Query: 61  GNDAGTERLIPFDIIPRIIHKAEWAKLEAGLVQRVRTLNMFIHDIYHEQKIVKAGIIPPE 120
           GN+AGTER+IPFDIIPR+I   EWA +EAGLVQRVRTLNMFIHDIYH+Q IVKAGIIPPE
Sbjct: 57  GNEAGTERVIPFDIIPRMITAREWAHMEAGLVQRVRTLNMFIHDIYHDQNIVKAGIIPPE 116

Query: 121 QIFQNAQYRREMQDVNVVNDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKM 180
           QIF+NAQYR EMQ ++V +DIYAHIAGVDIVRAG+GEFYVLEDNLRVPSGVSYMLE+RKM
Sbjct: 117 QIFRNAQYRPEMQGISVASDIYAHIAGVDIVRAGQGEFYVLEDNLRVPSGVSYMLEDRKM 176

Query: 181 MMRLFPDLFKRHKIAPVDHYPDLLLDNLRSVAPAGVTDPTVVVMTPGMYNSAYFEHAFLA 240
           MMRLFP+LF RH++APV HYPD+LLDNLRSVAP GVTDPTVVVMTPGMYNSAYFEHAFLA
Sbjct: 177 MMRLFPELFARHQVAPVAHYPDMLLDNLRSVAPIGVTDPTVVVMTPGMYNSAYFEHAFLA 236

Query: 241 QQMGVELVEGQDLFVKDNVVYMRTTRGPKRVDVIYRRIDDDFLDPLAFRPDSALGVPGLL 300
           QQMGVELVEGQDLFV DN VYMRTTRGPKRVDVIYRRIDDD++DPLAFR DS LGVPGLL
Sbjct: 237 QQMGVELVEGQDLFVNDNAVYMRTTRGPKRVDVIYRRIDDDYMDPLAFRADSTLGVPGLL 296

Query: 301 QAYRAGKVTLTNAIGTGVADDKSIYPYVPDMVRFYLSEEPILNNVPTYQCRKKEDLSYTL 360
             YR+G+VTL NAIGTGVADDKSIYP+VPDMVRFYLSEEPILNNVPTYQCRKK++LSY L
Sbjct: 297 SVYRSGRVTLANAIGTGVADDKSIYPFVPDMVRFYLSEEPILNNVPTYQCRKKDELSYVL 356

Query: 361 ANLEQLVVKEVHGAGGYGMLVGPASTKQEIEDFRARIIAKPDGYIAQPTLALSVCPTYVE 420
           ANL +LVVKEVHGAGGYGMLVGPASTK EIE+FR RIIA+PDGYIAQPTLALS CPT+V+
Sbjct: 357 ANLAELVVKEVHGAGGYGMLVGPASTKAEIENFRQRIIARPDGYIAQPTLALSACPTFVD 416

Query: 421 SGIAPRHLDLRPFVLSGKQITMVKGGLTRVALKEGSLVVNSSQGGGTKDTWILEK 475
           SG+APRH+DLRPFVLSGK I+MV GGLTRVALKEGSLVVNSSQGGGTKDTWILE 
Sbjct: 417 SGVAPRHIDLRPFVLSGKTISMVPGGLTRVALKEGSLVVNSSQGGGTKDTWILEN 471


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,128,118
Number of extensions: 47398
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 388
Effective length of database: 899,382
Effective search space: 348960216
Effective search space used: 348960216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)