BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0601.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981053|ref|YP_001354558.1| hypothetical protein mma_2868 [...   471   e-134

>gi|152981053|ref|YP_001354558.1| hypothetical protein mma_2868
           [Janthinobacterium sp. Marseille]
          Length = 318

 Score =  471 bits (1213), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/331 (70%), Positives = 263/331 (79%), Gaps = 14/331 (4%)

Query: 1   MLSRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLGISELLYGYN 60
           MLSRTADHLFWMARYTERAENTARMLDV+VQTALLPQS   AEQGWRA LGISEL   ++
Sbjct: 1   MLSRTADHLFWMARYTERAENTARMLDVNVQTALLPQSARSAEQGWRATLGISELQEAFD 60

Query: 61  QKYDKLTQKDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNATWIKMQS 120
           QKYDKLT +DV+ FM  D ++ SSI SCLR ARENARAVRG LTTE WE  N TW++MQ+
Sbjct: 61  QKYDKLTPRDVLHFMALDTSHSSSITSCLRAARENARAVRGTLTTEVWETHNTTWLEMQN 120

Query: 121 YLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNTARIIDV 180
            ++ +  E +PS FFEWVKHRSHLSRGVT+GTML+DEA  FIRLGTFLERADNTARI+DV
Sbjct: 121 QIEESDFENDPSQFFEWVKHRSHLSRGVTLGTMLQDEALFFIRLGTFLERADNTARILDV 180

Query: 181 KFHG-AKETQKHNGHGQVQSQSQAARDEAGQLDFYYWAAILRSVSGFEIYRKVYRDVITP 239
           KFHG A +T +  GH               QLDFYYWAAILRSVS FEIYRKVYRD ITP
Sbjct: 181 KFHGAATQTGEKPGH-------------ENQLDFYYWAAILRSVSAFEIYRKVYRDAITP 227

Query: 240 ERVAELLILRADMPRSLLACMGNVISNLHHVRNDVSADTERFAGKLHADLKFARIEEILE 299
            RVA+LL+L+ADMPRSLLA +  V+ NL  V  D   DT RFAGKLHA+LKFA I ++L+
Sbjct: 228 ARVADLLMLKADMPRSLLASLTGVVDNLSMVTGDTHNDTLRFAGKLHAELKFASINDVLK 287

Query: 300 AGLHDTLTEFLERIFELGNRISRDFLVPLAA 330
            GLHD LTEFLE I+ELGNRISR+FLVPLAA
Sbjct: 288 EGLHDYLTEFLEHIYELGNRISREFLVPLAA 318


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 747,194
Number of extensions: 28619
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)