BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0600.p
         (292 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981108|ref|YP_001354560.1| proteasome-type protease [Janth...   444   e-126

>gi|152981108|ref|YP_001354560.1| proteasome-type protease
           [Janthinobacterium sp. Marseille]
          Length = 294

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 207/293 (70%), Positives = 249/293 (84%), Gaps = 3/293 (1%)

Query: 1   MTYCVAMRLNSGLVFLSDSRTNAGVDHIGTFRKMSVYENPGDRVMVMMTAGNLSISQSIR 60
           MTYCVAMRL++GLVFLSDSRTNAGVDH+GTFRKM+V+E PG+R+MV+MTAGNLSISQS+R
Sbjct: 1   MTYCVAMRLDAGLVFLSDSRTNAGVDHVGTFRKMNVFEAPGERLMVLMTAGNLSISQSVR 60

Query: 61  QMLTERTNAEGRSIWTATTMYEAAQILGDAIRAVHDREAAELSKFGIDFNVSIIFGGQIR 120
           Q++ E T ++G+SIW  ++MYEAAQ++G+AIR VH+R+A  L +FGIDFNVS++FGGQI+
Sbjct: 61  QIIAEHTTSDGKSIWNVSSMYEAAQVVGEAIRMVHERDAGTLEQFGIDFNVSMVFGGQIK 120

Query: 121 GERCRLFQMYSAGNFIESHDENTYFQIGESKYGKPIIDRVVTPQTTLDEGAKCALISMDS 180
           GERCRLFQMYSAGNFIES DENTYFQIGESKYGKPIIDRVVTP T LDE AKCALISMDS
Sbjct: 121 GERCRLFQMYSAGNFIESQDENTYFQIGESKYGKPIIDRVVTPDTPLDEAAKCALISMDS 180

Query: 181 TLKSNISVGLPLDLLVYQSEDLAVTRFVTIDEQNQYFQMIRRSWGSQLKRVFEAIDDPVW 240
           TL+SNISVGLPLDLL+Y+++ L VTRFVTIDE NQYFQMIR +W  QLK VFE+I DPVW
Sbjct: 181 TLRSNISVGLPLDLLIYETDKLTVTRFVTIDEHNQYFQMIRNTWAKQLKTVFESISDPVW 240

Query: 241 DAPPEDTLNVLSSVTDLSEPVRVPPPN--GVARGLQAV-PRQILAQQDGDVGQ 290
           +A PE T NVLSS    ++P+R+ PP   G+ + + A  P Q LAQ + +  Q
Sbjct: 241 NAAPETTSNVLSSQGHKNQPLRILPPAQFGIDKTVSAPGPLQTLAQDESNKRQ 293


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 635,445
Number of extensions: 23850
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 210
Effective length of database: 917,867
Effective search space: 192752070
Effective search space used: 192752070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)