BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0594.p
         (521 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobac...   719   0.0  
gi|152980497|ref|YP_001354880.1| tRNA nucleotidyltransferase [Ja...    85   1e-17

>gi|152981224|ref|YP_001354564.1| poly(A) polymerase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/440 (82%), Positives = 395/440 (89%), Gaps = 12/440 (2%)

Query: 1   MIKKLIRSILG-KGKTTDKSKTKAVGPDGKIEPDVLDPKQHGIDPALVSPNAVRVTQTLQ 59
           MIKKLIR ILG K KT D +           +P VL  K+H IDP LVS NAVRVT TLQ
Sbjct: 1   MIKKLIRRILGTKQKTGDTT-----------QPVVLTAKEHRIDPKLVSANAVRVTSTLQ 49

Query: 60  EAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQE 119
           +AG+KAF+VGGAVRDLLLG+KPKDFD+ATNATPEQVK+LFRRAFIIG+RFQIVHVMFGQ+
Sbjct: 50  QAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQD 109

Query: 120 LIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHG 179
           L+EVTTFRGAS EAAPKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDPA+Q VLDYHG
Sbjct: 110 LLEVTTFRGASTEAAPKDEHGRVLRDNTFGEQHEDALRRDFTINAMYYDPATQTVLDYHG 169

Query: 180 GIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVP 239
           G+ADIR+K LRIIG PEARYREDPVRMLRVVRFAAKL F+IDP +SAPIRVMAPLI+NVP
Sbjct: 170 GMADIRNKTLRIIGVPEARYREDPVRMLRVVRFAAKLNFSIDPDTSAPIRVMAPLINNVP 229

Query: 240 AARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDAR 299
           AARVFDEMLKLLMSG ALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV LALA+TD R
Sbjct: 230 AARVFDEMLKLLMSGSALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVRLALASTDER 289

Query: 300 VKEGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKI 359
           VK+GK VSPGFLFASLLWHQVLEKW+AYQAAGEYPIPALHLAADDVL+ QT+KLALQRKI
Sbjct: 290 VKQGKPVSPGFLFASLLWHQVLEKWKAYQAAGEYPIPALHLAADDVLNTQTDKLALQRKI 349

Query: 360 ASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAELGEWWEAFIA 419
           ASDMRDIWAMQPRFERR+GK+PYKLLEHLR+RAG+DFLLLRC SGE+D+E+GEWW AF+ 
Sbjct: 350 ASDMRDIWAMQPRFERRIGKSPYKLLEHLRMRAGYDFLLLRCASGEIDSEIGEWWTAFME 409

Query: 420 GNGAEREELIARKPTDTASA 439
            +G  RE L+A+KP  TA A
Sbjct: 410 ADGPGREALLAKKPGSTAEA 429


>gi|152980497|ref|YP_001354880.1| tRNA nucleotidyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 416

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 161/356 (45%), Gaps = 47/356 (13%)

Query: 64  KAFIVGGAVRDLLLGIKPKDFD-VATNATPE-QVKQLFRRAFIIGRRFQI-VHVMFGQEL 120
           K +IVGGAVRD LLG+  KD D V   ATPE  V Q +     +G+ F + +H     E 
Sbjct: 2   KTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVAQGYTP---VGKDFPVFLHPKTHAEY 58

Query: 121 IEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGG 180
               T R    + AP  + G V   +      ED  RRD TINAM  D    +++D  GG
Sbjct: 59  ALARTER----KTAPGYK-GFVFHTDASVTLEEDLIRRDLTINAMAQD-EDGSIVDPFGG 112

Query: 181 IADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTIDPASSAPIR--VMAPLIDN 237
               RD +LRI       + EDPVR+LR+ RFAA+  +FT+   ++  ++  V A  +D 
Sbjct: 113 K---RDLELRIFRHVSPAFAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDA 169

Query: 238 VPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKF-------VS 290
           +   RV+ E+ + LM        + LR  G    +LP LDV+   P   ++       V 
Sbjct: 170 LVPERVWQELARGLMEVRPSRMFEVLRDCGALQRILPELDVLWGVPQPAQYHPEIDTGVH 229

Query: 291 LALA-NTDARVKEGKGVSPGFLFASLLWHQVL-EKWRAYQAAGEYPIPALHLAADDVLDA 348
           + L  +  A +K    V    L   L     L ++W  +     + +         ++D 
Sbjct: 230 IMLVIDYAAGIKADLPVRCAALLHDLGKGVTLPDQWPRHHGHEMHSV--------KLVDT 281

Query: 349 QTEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLL-RCQS 403
            +++L    KI +D RD+  M  R    VG+A       L LRA     LL RC +
Sbjct: 282 VSKRL----KIPNDCRDLALMTAREHGNVGRA-------LELRANTIVNLLERCDA 326


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,039,242
Number of extensions: 41333
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 521
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 434
Effective length of database: 899,382
Effective search space: 390331788
Effective search space used: 390331788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)