BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0592.p (420 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [... 203 2e-53 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 184 1e-47 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 178 5e-46 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 170 1e-43 gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinoba... 168 6e-43 >gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [Janthinobacterium sp. Marseille] Length = 558 Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 159/243 (65%) Query: 154 DLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLIHD 213 L +AI GQL ++QPK+ ++TG + VEAL RW HPERG +PP F+P AEQ LI+ Sbjct: 303 SLMSAIKEGQLSLHYQPKICIRTGEVHSVEALMRWNHPERGNIPPAIFIPRAEQSTLINL 362 Query: 214 LTISMMDQSMAQAAVWHSRGLAIKVAVNLSPLSLEQPDFMHRILALVDKHALPAENVVLE 273 +T ++Q+M Q +W +G+ + +AVN+SP +L QP F +L+L+ ++ + +++ LE Sbjct: 363 ITEFALEQAMKQIVLWRQQGIHLPIAVNISPRNLLQPGFSDLVLSLLQRYEVSGQSLELE 422 Query: 274 ITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVHGA 333 +TE +++ ++ L+RL +SIDD+GTG+SS+Q L ++P + +KID+SFV Sbjct: 423 VTEGALMTDIARTIIELSRLAEAKITISIDDFGTGYSSLQYLHQLPISLIKIDQSFVRRL 482 Query: 334 HDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPANEL 393 D K I+++A+ +A ++ + T+AEGVE ++LL D GC + QG++I +P+PA E Sbjct: 483 PDDKGAVHIVEAAVTLAHKMGMQTIAEGVEEQSAYKLLSDLGCDIAQGYMISRPLPAAEF 542 Query: 394 PLW 396 W Sbjct: 543 EKW 545 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 151/252 (59%), Gaps = 1/252 (0%) Query: 152 ESDLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLI 211 E DL A+ G+ + ++QP++D++TG + GVEAL RW HPE GM+PP RF+ LAE+ GLI Sbjct: 695 EGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLI 754 Query: 212 HDLTISMMDQSMAQAAVWHSRGL-AIKVAVNLSPLSLEQPDFMHRILALVDKHALPAENV 270 + ++ ++ Q VW GL +++++VNLS Q D + I +++ LP + + Sbjct: 755 VPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQLPPQCL 814 Query: 271 VLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFV 330 +E+TES V+A +++G+L L+ G LSIDD+GTG+SS+ L R P LKIDRSFV Sbjct: 815 EIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFV 874 Query: 331 HGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPA 390 + + I+ S + +A L L +AEGVET E LQ C QG+ +P+ A Sbjct: 875 NDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPITA 934 Query: 391 NELPLWLKGHHR 402 + + + LK R Sbjct: 935 DAMEVMLKDDKR 946 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 178 bits (452), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 147/244 (60%), Gaps = 1/244 (0%) Query: 152 ESDLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLI 211 E L AI + Y+QP+V+ QTG + G+EAL RW HPERG++ PD F+PLAE G+I Sbjct: 658 ERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHPERGLIAPDHFIPLAESTGMI 717 Query: 212 HDLTISMMDQSMAQAAVWHSRGLAI-KVAVNLSPLSLEQPDFMHRILALVDKHALPAENV 270 L +M++ Q A W + LA+ V+VN+S ++ + I + ++K+A+ + Sbjct: 718 LPLGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEGNVSEFIASCLNKYAVDPRFI 777 Query: 271 VLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFV 330 +E+TES+++ + G ++ + G + +DD+GTG+SS+ L + LK+DR+F Sbjct: 778 EIELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYSSLSLLYKFNMDVLKVDRAFT 837 Query: 331 HGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPA 390 + K + S + MA+ L++ VAEGVET+E R+LQ GC QG+L+ KP+P+ Sbjct: 838 SQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRVLQQLGCDEIQGYLVSKPIPS 897 Query: 391 NELP 394 +++P Sbjct: 898 SDVP 901 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 161/293 (54%), Gaps = 11/293 (3%) Query: 102 VETMIQALGMNLIGVLQKPLNQGQLRAALQAFRPHGAAARAHDDPLPSMCESDLGAAIGG 161 VET+++ + + K ++GQ R F H D + E +L AI Sbjct: 605 VETLVKNADIAMYAA--KTGSKGQFR-----FYDH---TLYEDIKMRLNTEQELQQAIKE 654 Query: 162 GQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLIHDLTISMMDQ 221 Q L Y+QP+V QTG L G+EAL RW HP RG+V P+ F+ LAE+ GLI+ + ++D+ Sbjct: 655 DQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLVLPNDFIGLAEESGLINPIGELVVDK 714 Query: 222 SMAQAAVWHSRGL-AIKVAVNLSPLSLEQPDFMHRILALVDKHALPAENVVLEITESSVV 280 AQ A W +G+ A+ V+VN+SP + I A + KH +PA + +E+TES+++ Sbjct: 715 VCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKSIAASLAKHGIPASLLEIELTESAMM 774 Query: 281 AHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLR 340 + G+ L + G + +DD+GTG+SS+ L R+ LKID++F K+ Sbjct: 775 RNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLLQRLDMDILKIDQAFTSQLGRGKDGE 834 Query: 341 VILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMPANEL 393 + + + MA+ L + VAEGVET+E +LQ C QG+ + P+PA+ + Sbjct: 835 IFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLSCDEVQGYYVAWPLPADNI 887 >gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 459 Score = 168 bits (425), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 150/256 (58%), Gaps = 3/256 (1%) Query: 152 ESDLGAAIGGGQLLPYFQPKVDVQTGILKGVEALARWIHPERGMVPPDRFVPLAEQCGLI 211 E+DL A+ QL+ Y+QP+ G + G EAL RW HP +GMV P F+PLAEQ GLI Sbjct: 189 EADLRKALQDNQLMLYYQPQTG-NDGRIVGAEALLRWRHPVKGMVSPADFIPLAEQTGLI 247 Query: 212 HDLTISMMDQSMAQAAVW--HSRGLAIKVAVNLSPLSLEQPDFMHRILALVDKHALPAEN 269 + ++ + AQ W H + +A+N+S L +QPDF+ ++++++D+ Sbjct: 248 LPIGHWVLGMACAQLISWSKHPATAQLSLAINVSALQFKQPDFVSQVVSVLDRSGADPHL 307 Query: 270 VVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSF 329 + LE+TES +V + + + L+ KG LS+DD+GTG+SS+ L ++P +LKID+SF Sbjct: 308 LELELTESMLVNDVNDIIAKMNALKEKGLRLSLDDFGTGYSSLSYLKKLPLDQLKIDQSF 367 Query: 330 VHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGFLIGKPMP 389 V N I+++ +++A+ + L +AEGVET E + L + GC QG+L+ +P+P Sbjct: 368 VRDMLFDSNDVTIVRTVVELARGMGLHVIAEGVETQEQRQFLAELGCLSFQGYLLSRPVP 427 Query: 390 ANELPLWLKGHHRRLN 405 E + H+ L Sbjct: 428 NAEFEAVVLAHNTALK 443 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,020,190 Number of extensions: 44206 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 15 Length of query: 420 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 334 Effective length of database: 903,079 Effective search space: 301628386 Effective search space used: 301628386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)