BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0590.p
         (299 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein methylt...   121   6e-29
gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein methylt...    77   1e-15

>gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 292

 Score =  121 bits (303), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 34  EISDHDMLLFQQLFKRHIGLHLPLSKKALLQSRLNHRLHELGLRDLTQYFRRISGEHDVE 93
           E +  D    + L  +  G+ L  SK+ ++ SRL  RL   G+     Y  ++      E
Sbjct: 16  EFTARDFERVRALIHKKAGIALAESKQEMVYSRLARRLRATGIGSFVSYLDQLEQGGSDE 75

Query: 94  ERQRAIDLITTNETYFFREQGHFDFLKQELLPQWEQHKSLRVWSAACATGEEAYTLAMLL 153
           E +   + +TTN T FFRE  HF  L   +    +  + + +W +A +TGEE Y++AM  
Sbjct: 76  EWEAFTNALTTNLTSFFREAHHFPILADHIK---KIKEPIEIWCSAASTGEEPYSIAMTA 132

Query: 154 DQ--QRAAGSWSVLGSDISLRVLRFARRALYPMARGQNIPRPYLRRYCLLGTGEYEGHFL 211
            +          ++ +DI   VL      +Y + R   +     +R+ L G G  EG   
Sbjct: 133 CEAFNTLTPPVRIIATDIDTNVLNTGANGVYSIDRLDKMSPERAKRFFLRGKGAREGMVR 192

Query: 212 VQSDLRAKVDFAQRNLTALHEHDDGLYDLIFLRNVIIYFDSDTKLKVLRDVIARLRPGGY 271
           V+ +LR  + F Q NL   +    G +D IF RNV+IYFD  T+ K+L      ++P G 
Sbjct: 193 VRPELRQMITFKQVNLLESNWGISGQFDAIFCRNVMIYFDKPTQGKILDRFAPLMKPDGL 252

Query: 272 LVVGHSESL 280
           L  GHSE+ 
Sbjct: 253 LFAGHSENF 261


>gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 424

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 31/248 (12%)

Query: 46  LFKRHIGLHLPLSKKALLQSRLNHRLHELGLRDLTQYFRRISGEHDVEERQRAIDLITTN 105
           L +  +GL +      L++  ++ R+  LG+   TQ    ++ +    E Q  I+L+   
Sbjct: 10  LLRHSMGLDVASVGMMLIERAVSERMLTLGM---TQDAYLLALQSAPGELQELIELVIVP 66

Query: 106 ETYFFREQGHFDFLKQELLPQWEQH--KSLRVWSAACATGEEAYTLAM-LLDQQRAAGSW 162
           ET+FFR++     L +    Q  +   + +RV S  C+TGEE Y++AM LLD    + ++
Sbjct: 67  ETWFFRDREAILSLARMARQQIAEKPDRCVRVLSLPCSTGEEPYSVAMALLDAGVPSVNF 126

Query: 163 SVLGSDISLRVLRFARRALYPMARGQNIPRPYLRRYCLLGTGEYEGHFLVQSD------- 215
            +   DI  R L  A R +Y    G+N  R  L  Y        + HF    D       
Sbjct: 127 HIDAIDICHRSLAIAERGVY----GRNSFRGKLLDY-------RDRHFDTSKDEARLSEL 175

Query: 216 LRAKVDFAQRNLTA----LHEHDDGLYDLIFLRNVIIYFDSDTKLKVLRDVIARLRPGGY 271
           +R +V+F   N+ A    L+E     YD +F RNV+IYFD + + + +  +   L P G 
Sbjct: 176 VRQQVNFRHGNMFAGDFLLNEKP---YDFVFCRNVLIYFDREMQQQAVEVLDRLLHPQGT 232

Query: 272 LVVGHSES 279
           + VG +E+
Sbjct: 233 IFVGPAEA 240


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 658,869
Number of extensions: 25684
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 216
Effective length of database: 914,170
Effective search space: 197460720
Effective search space used: 197460720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)