BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0589.p
         (191 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981612|ref|YP_001351771.1| purine-binding chemotaxis prote...   100   1e-22
gi|152981613|ref|YP_001354517.1| purine-binding chemotaxis prote...    99   2e-22
gi|152980520|ref|YP_001353784.1| CheW purine-binding chemotaxis ...    94   4e-21

>gi|152981612|ref|YP_001351771.1| purine-binding chemotaxis protein
           CheW [Janthinobacterium sp. Marseille]
          Length = 164

 Score = 99.8 bits (247), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 93/147 (63%), Gaps = 4/147 (2%)

Query: 21  ETRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVR 80
           E+ ++L F +G E + + I  ++E+  +  +T++   P+F++GV+NLRG +VP+ID+ ++
Sbjct: 15  ESLEYLAFTLGHEEYGVSIQKVQELRGYDAVTQIANAPEFIKGVVNLRGIIVPIIDMRIK 74

Query: 81  FGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADF 140
           F        + T V+I+ +       ++G++VD+VS V+ +  +QI+P P  G  +  ++
Sbjct: 75  FNLGTPTYDQFTVVVILNINNR----VVGMVVDSVSDVITLTPEQIKPAPEMGGAVDTNY 130

Query: 141 IAGMINVNERFIVVLDVPRVLSVDELA 167
           + G+  V+ER ++++D+ R++S +E+ 
Sbjct: 131 LVGLGTVDERMLILVDIDRLMSSNEMG 157


>gi|152981613|ref|YP_001354517.1| purine-binding chemotaxis protein
           CheW [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 98.6 bits (244), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 98/161 (60%), Gaps = 4/161 (2%)

Query: 14  RQQEEVIETRQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVP 73
           + +++ +   + L F +G+E + + I  ++EI  +  +T++   P+F++GVINLRG +VP
Sbjct: 2   QNKQQSLGGTEVLAFTLGSEEYGIDILKVQEIRGYDAVTKIANAPEFIKGVINLRGIIVP 61

Query: 74  VIDLSVRFGRAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFG 133
           ++D+ + F        + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G
Sbjct: 62  IVDMRIMFKLGAPTYDQFTVVIILNIGNR----VVGIVVDSVSDVITLNGEQIKPAPEMG 117

Query: 134 AGIRADFIAGMINVNERFIVVLDVPRVLSVDELASLLGMSA 174
             + ADF+ G+  + ER +++LD+ +++S  E+  +  ++A
Sbjct: 118 TSMNADFLIGLGTIEERMLILLDIDKLMSSSEMGLMEKLAA 158


>gi|152980520|ref|YP_001353784.1| CheW purine-binding chemotaxis
           protein [Janthinobacterium sp. Marseille]
          Length = 163

 Score = 94.4 bits (233), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 92/152 (60%), Gaps = 4/152 (2%)

Query: 23  RQFLTFLVGTESFAMPIASIREIIEFGGLTEVPLMPQFLRGVINLRGSVVPVIDLSVRFG 82
            +FL F +G E + + I  ++EI  +  +T +   P+F++GV+NLRG +VP++D+ ++F 
Sbjct: 16  NEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEFVKGVVNLRGIIVPIVDMRIKFN 75

Query: 83  RAPTVPSKRTCVIIMELMQEDQLLLLGVMVDAVSAVLGIGVDQIEPRPSFGAGIRADFIA 142
                  + T VII+ +       ++G++VD+VS V+ +  +QI+P P  G     D++ 
Sbjct: 76  LGEPTYDQFTVVIILNIGGR----VVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLI 131

Query: 143 GMINVNERFIVVLDVPRVLSVDELASLLGMSA 174
           G+  ++ER ++++D+ +++S  E+  +  ++A
Sbjct: 132 GLGTLDERMLILVDIDKLMSSSEMGLIEKIAA 163


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 404,345
Number of extensions: 15409
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 113
Effective length of database: 932,655
Effective search space: 105390015
Effective search space used: 105390015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)