BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0588.p (592 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 209 4e-55 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 206 2e-54 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 201 8e-53 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 199 3e-52 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 199 5e-52 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 209 bits (532), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 205/319 (64%), Gaps = 20/319 (6%) Query: 245 VVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKIS-VLYSTQQMV 303 V L + +G RS I EA+ V + VA GDLT + ++ +D+ +L + + M Sbjct: 194 VALLLSIGLGIVISRS-ITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMN 252 Query: 304 NKWTDVIGDV-SGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQN 362 ++ +V SGTA+ +A+AS QI+S + LS + +QA+++EET++S+EE+T+T+ QN Sbjct: 253 QSLIGIVDEVRSGTAT-MATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQN 311 Query: 363 ADNARTTDGIASLSAS-AATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLL 414 ADNAR + + SLSAS A +GG+ V E V M K+I IG+ID IA+QTN+L Sbjct: 312 ADNARQANSL-SLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNIL 370 Query: 415 ALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG-------LAEKA 467 ALNAA+EAARAGE G+GFAVVA+EVR LA+R+ AA+EI A+ ++SVG L +A Sbjct: 371 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQA 430 Query: 468 GGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEELSATS 527 G + ++V S+++ D++ EI AAS EQS G+EQ+N A+ QM TQ AA EE +A + Sbjct: 431 GSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAA 490 Query: 528 EEMSAQAIHLQDLMRFFRV 546 + QA+ L+ + F++ Sbjct: 491 GSLKDQAVKLEQTVSVFKI 509 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 150/414 (36%), Positives = 237/414 (57%), Gaps = 35/414 (8%) Query: 156 RIEITAFHAVKGEFDDGEGKFT-VVGAPNQAMAQELVFDQT------YRTLFGRVMAPIN 208 R I A +G F + KF +V +A AQ L+F + Y R++ + Sbjct: 110 RTYIKALTDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQS 169 Query: 209 DFLRQVDERTQARVIQAGTEYTRLEQKIFWLLTASMVVLFVCLGF-AYRTIRSQIGGEPR 267 + + + E E + Q++ +L+ V++ LGF A R+I + Sbjct: 170 NLMHKAGEDAH--------EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLS---- 217 Query: 268 EAMSVLRRVAEGDLTVTVPLRKRDKIS-VLYSTQQMVNKWTDVIGDVSGTASALASASEQ 326 +A+ + R+VA+GDLT T+ + +D+ +L + Q M N ++ V +A+AS Q Sbjct: 218 QAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQ 277 Query: 327 ISSSSQALSHNSSQQAANVEETSASVEEITATIAQNADNARTTDGIASLSASAATEGGEA 386 I++ + LS + +QA+++EET++S+EE+T+T+ QNADNAR ++ +A ++ A GG Sbjct: 278 IATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAV 337 Query: 387 VRETVAAM-------KQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEV 439 V + V M +I IG+ID IA+QTN+LALNAA+EAARAGE G+GFAVVA+EV Sbjct: 338 VSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 397 Query: 440 RKLAERAQTAAQEIIAVAENSVG-------LAEKAGGLLNQMVPSIRKTADLVQEIAAAS 492 R LA+R+ +AA+EI + ++SV L AG + ++V S+R+ D++ EI AAS Sbjct: 398 RNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAAS 457 Query: 493 AEQSTGLEQINNAVHQMAQTTQMTAAASEELSATSEEMSAQAIHLQDLMRFFRV 546 EQ+ G+EQIN AV QM Q TQ AA EE +A +E + QA +L ++ F++ Sbjct: 458 QEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 201 bits (512), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 206/332 (62%), Gaps = 21/332 (6%) Query: 230 TRLEQKIFWLLTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRK 289 T+L IF ++ + +F L A R+I + +A+ + R+VA+GDLT ++ + Sbjct: 186 TQLLIGIFSIIAVLIAAVFAVL--ATRSITRPLS----QAVVLARKVADGDLTGSIVVES 239 Query: 290 RDKIS-VLYSTQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEET 348 +D+ +L + + M ++ V +ASAS QI++ + LS + QQA+++EET Sbjct: 240 KDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEET 299 Query: 349 SASVEEITATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKI 401 ++S+EE+T+T+ QNA+NAR ++ +A ++ A GG V + V M K+I I Sbjct: 300 ASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDII 359 Query: 402 GIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSV 461 G+ID IA+QTN+LALNAA+EAARAGE G+GFAVVA+EVR LA+R+ +AA+EI + +SV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 419 Query: 462 G-------LAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQ 514 L + AG + ++V S+++ D++ EI AAS EQ+ G+EQIN AV QM Q TQ Sbjct: 420 DKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 515 MTAAASEELSATSEEMSAQAIHLQDLMRFFRV 546 AA EE +A +E + QA HL ++ F++ Sbjct: 480 QNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/343 (39%), Positives = 207/343 (60%), Gaps = 17/343 (4%) Query: 239 LLTASMVVLFVCLGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKIS-VLY 297 L+ S +VL + A+R + I + A+ RRVA GDLT + +D+ +L Sbjct: 193 LMLLSAMVLAFGIFCAWR-LTIGITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLA 251 Query: 298 STQQMVNKWTDVIGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITA 357 + + M + ++G+V + +AS +I++ + LS + QQA+++EET++S+EE+T+ Sbjct: 252 ALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTS 311 Query: 358 TIAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQ 410 T+ QNADNAR + +A ++ A +GG+ V + V M ++I I +ID IA+Q Sbjct: 312 TVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQ 371 Query: 411 TNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG-------L 463 TN+LALNAA+EAARAGE G+GFAVVA EVR LA+R+ +AA+EI A+ +SVG L Sbjct: 372 TNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKL 431 Query: 464 AEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTAAASEEL 523 +AG ++++V SIR+ D++ EI AAS EQS G+EQIN A+ QM TQ A+ EE Sbjct: 432 VAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEA 491 Query: 524 SATSEEMSAQAIHLQDLMRFFRVGEMQKL-PARGRSNNGRAPK 565 +A +E M QA L ++ F++ Q+ P R APK Sbjct: 492 AAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVTRLAPK 534 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 199 bits (505), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 121/279 (43%), Positives = 178/279 (63%), Gaps = 16/279 (5%) Query: 251 LGFAYRTIRSQIGGEPREAMSVLRRVAEGDLTVTVPLRKRDKIS-VLYSTQQMVNKWTDV 309 + AY S I EA+ + + VA GDLT + + +D+ +L + + M + Sbjct: 204 IALAYWITHS-ITKPLHEAVKIAQTVAAGDLTSVIEAKYKDETGQLLRALKDMNGSLIRI 262 Query: 310 IGDVSGTASALASASEQISSSSQALSHNSSQQAANVEETSASVEEITATIAQNADNARTT 369 +G+V + A+A AS QI+S + LS + +QA+++EET++S+EE+T T+ QNADNAR Sbjct: 263 VGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETASSMEELTGTVRQNADNARQA 322 Query: 370 DGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLLALNAAIEA 422 + +A ++S A++GG+ V + V M K+IA IG+ID IA+QTN+LALNAA+EA Sbjct: 323 NQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGVIDGIAFQTNILALNAAVEA 382 Query: 423 ARAGEHGKGFAVVAAEVRKLAERAQTAAQEIIAVAENSVG-------LAEKAGGLLNQMV 475 ARAGE G+GFAVVA EVR LA+R+ AA+EI + +SV L + AG + ++V Sbjct: 383 ARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQKVNAGSRLVDDAGSTMQEVV 442 Query: 476 PSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQ 514 S+R+ D++ EI AAS EQ+TG+EQIN AV QM TQ Sbjct: 443 ASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQ 481 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,068,821 Number of extensions: 38511 Number of successful extensions: 303 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 21 Length of query: 592 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 503 Effective length of database: 891,988 Effective search space: 448669964 Effective search space used: 448669964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)