BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0587.p (731 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 361 e-101 gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 227 2e-60 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 206 4e-54 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 168 1e-42 gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Jan... 92 1e-19 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 251/717 (35%), Positives = 371/717 (51%), Gaps = 43/717 (5%) Query: 13 EARELLVAMESALLQIEVEGPSRDRINAIFRAAHTIKGSAGLFAFDSIVQFTHQVEHVLD 72 E ELL ME LL ++V P + +NAIFRAAH+IKG A F + + TH +E +LD Sbjct: 15 ETEELLAEMEKLLLAVDVSAPDEEDLNAIFRAAHSIKGGAATFGITDLTEVTHVLETLLD 74 Query: 73 LVREERLALNGPLMSLLLQCGDYIGELVDAIERGQEAEEPNAQRRAA----LLAELEQVA 128 +R+ +AL + L D + +D G P A LL L Q Sbjct: 75 RIRKGEMALMAEHVDAFLSAKDVLKMQLD----GHRLHTPVDLEAVADVRILLESLSQDD 130 Query: 129 LSAPAQAVTRVDPQMAVAVAVQG-PSATLAPELEASAQLSVDCPYWHLSLQFNQNVLRDG 187 + P A VA AV G PS +E + D L + RD Sbjct: 131 AAPPQSA--------PVAAAVPGIPSGDRRFRIELPQTSARDVDALAAELGLLGEIQRDV 182 Query: 188 LDPLSFLHYLRSLGRIVAILPVESSI--PEAAAMDAESCYLGVEICLASDSTRQTLEDVF 245 L + L + + I+ + S I P+ + E+ GV + D +R E + Sbjct: 183 LPDQRAVFTLSTQEGVDDIIAICSFILDPQDLKITEEAVIKGVHQSI-DDRSRNEEEQGY 241 Query: 246 EFVRDDSRIDILPPHSRLADYATVLQRLAPEEAVRLA-SLWRGLGLFDDAQWRCLGAIGL 304 F P HS +A+ A AP + L + + + D+ + L Sbjct: 242 GFFE--------PLHSTIAENAQGYGFFAPFVPLPLPDATSKDVVEHDEEKGNALAV--- 290 Query: 305 KDSAAPPLLSSAIADVVQRPRPLEERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARL 364 ++ V + + + E I++ + K+DQLI+LVGELVI A Sbjct: 291 --EEVHAAAATTDKKAVAKRDTDKMNVSAESSSIRVGIEKVDQLINLVGELVITQAMIEQ 348 Query: 365 IARRRKDSQFEEATQAIDTLMEQIRD---AALTLRMVQINEVFQRFPRIVRDIARDLDKD 421 Q E ++ L RD A +++RM+ ++ VF RFPR+VRD+A L K Sbjct: 349 RTGALDPMQHERLLNSVSQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLASKLGKK 408 Query: 422 IELSMTGSDTELDKSMVERLADPLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHE 481 +E G+ TELDK ++ER+ DPL H+VRN+IDHGIE R+AAGK A L L+A H+ Sbjct: 409 VEFVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIEMPDTRVAAGKSASGQLSLSAGHQ 468 Query: 482 SGSVVVEVMDDGRGMDRDRILEKAVAQGLVAPDAELTDAEIYRCVFEPGFSTAQQVTELS 541 G++++EV DDG G++R+RIL KA QGL D +L D E+++ +F PGFSTA+ VT++S Sbjct: 469 GGNIIIEVSDDGGGLNRERILAKAKQQGLPVSD-DLPDEEVWQLIFAPGFSTAEAVTDVS 527 Query: 542 GRGVGMDVVKRNIDALHGEVAIDTERGRGTVVRLRLPLTLAIISGFQVVVGNAVFVIPLD 601 GRGVGMDVVKRNI A+ G V I + +G GT + + LPLTLAI+ G + VG+ ++++PL Sbjct: 528 GRGVGMDVVKRNITAMGGSVDIRSSKGYGTTILISLPLTLAILDGMSIKVGDEIYILPLG 587 Query: 602 MVVECI-----DMPPQHNGTHIVSVRGEPLPFVPLRELFDLPAREQGRARKSLVIVQYGQ 656 VVE + D+ ++ VRG+ LP +PL ++F + R + +VI++ Sbjct: 588 YVVESLQPELADIKDISGQGQVIKVRGDYLPLIPLYKIFSIEPRFTDPSEGIVVILESES 647 Query: 657 LRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGRVALILDIPHLVHHTQQ 713 +A L VD L+G+ Q V+K L + KV G+SG+TILGDG VALI+D+ L+ ++Q Sbjct: 648 KKAALFVDDLVGQQQVVVKNLESNYRKVAGISGATILGDGGVALIIDVAALLRSSRQ 704 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/397 (35%), Positives = 231/397 (58%), Gaps = 31/397 (7%) Query: 332 AQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLM------ 385 A ++ I+++ KLD L+++ GE V A A ++ K +QF A TLM Sbjct: 221 ALKEDSIRVDAVKLDTLLEVAGESVQAANQASVL--LEKLAQFPVEGHAA-TLMAALAET 277 Query: 386 --------EQIRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIELSMTGSDTELDKSM 437 +++ A L RM + ++FQ+FPR+VR++A+DL KD+EL + G++TE+D+ + Sbjct: 278 LNRASRYSTELQRATLATRMQPVGKLFQKFPRLVRELAKDLGKDVELQIEGAETEVDRVV 337 Query: 438 VERLADPLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMD 497 V+ L DPL+H++RN++DHGIE AA R +GKPAK+T+ L A E+ SV++E+ DDG+GMD Sbjct: 338 VDSLYDPLVHMLRNSLDHGIEEAAVRAKSGKPAKSTILLKAWQEASSVMIELSDDGKGMD 397 Query: 498 RDRILEKAVAQGLVAPDAELTDAEIYRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDAL 557 ++ KA+++GL++ +A + E+ + VF PGFST + +SGRGVGMDVVK ++ Sbjct: 398 GQQLRAKAISKGLISDNAAQSQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTAVEKH 457 Query: 558 HGEVAIDTERGRGTVVRLRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMP---PQHN 614 G + ID+ G GT +RLP+ L+I+ V +A +P+ +V +++P Q Sbjct: 458 RGAITIDSVLGAGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVELPEEFEQVG 517 Query: 615 GTHIVSVRGEPLPFVPLRELFDLPAREQGRARKSLVIV--QYGQLRAGLLVDGLLGECQA 672 G ++ +G PL P+R L A E G + +VI Q L G++ G Sbjct: 518 GAPVLRDQGRPL---PVRSLAGALAYEVGVEKVGIVIAAPQPYILSVGMVE----GTADL 570 Query: 673 VIKPLGRLFGKVKGLSGSTILGDGRVALILDIPHLVH 709 VIKP+ + V G++G+ +G + L++ + L+ Sbjct: 571 VIKPMTAI--TVPGIAGTARSAEGELVLVVGLSFLLE 605 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 204/367 (55%), Gaps = 8/367 (2%) Query: 343 SKLDQLIDLVGELVI-AGASARLIARRRKDSQFEEATQAIDTLMEQIRDAALTLRMVQIN 401 ++L +L ++ E V G+ + ++R + + TQA L ++ + +RMVQ Sbjct: 1362 TRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTTQA--RLTRDLQQDLMRVRMVQFA 1419 Query: 402 EVFQRFPRIVRDIARDLDKDIELSMTGSDTELDKSMVERLADPLMHIVRNAIDHGIEPAA 461 + +R R+ R +++ DK + L + GS E+D+ ++E++A P H++RNAI HGIE Sbjct: 1420 SISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGVLEKMAGPFEHLLRNAIVHGIESRE 1479 Query: 462 ERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMDRDRILEKAVAQGLVAPDAELTDAE 521 +R AAGK LR+ E VV+ DDG+G++ D I KA++ GL+ D L+D+E Sbjct: 1480 KRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLNLDNIRNKALSSGLLTEDMALSDSE 1539 Query: 522 IYRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDALHGEVAIDTERGRGTVVRLRLPLTL 581 +F PGFSTA+++TEL+GRG+GMDVV+ +L G VAI +E G+G + LPLTL Sbjct: 1540 TTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIASEAGKGANFTIHLPLTL 1599 Query: 582 AIISGFQVVVGNAVFVIPLDMV--VECIDMPPQHNGTH--IVSVRGEPLPFVPLRELF-D 636 A+ + G + IP +V V+ + P + V + + +P L L D Sbjct: 1600 AVTQVVLLSTGGKTYAIPSVLVEQVQQLKTGPLAAAYNEGAVMWQSQRVPMHYLSSLLGD 1659 Query: 637 LPAREQGRARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDG 696 L + L+I++ G R L VD +LG + V+K +G ++ G++G+T+LG G Sbjct: 1660 LQVAPVTQQYSPLLILKSGNERVALHVDEILGNREVVVKNIGPQLSRMIGIAGATVLGSG 1719 Query: 697 RVALILD 703 + LIL+ Sbjct: 1720 EIVLILN 1726 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 136/477 (28%), Positives = 221/477 (46%), Gaps = 82/477 (17%) Query: 306 DSAAPPLLSSAIADVVQRPRPLEERRAQEQKFIKIEVSKLDQLIDLVGELVI-------- 357 D+AA L A + + E R + +++ LD+L+ L GE ++ Sbjct: 149 DNAAGNLAVEAESQPISNGAMASEARESNIRSVRVNAKNLDRLLSLSGESLVESRRLKPF 208 Query: 358 -------------AGASARLIARRRKDSQFEEATQA----IDTLMEQ------------- 387 AG + L+ ++ +EATQA + TLM Q Sbjct: 209 TASILRLKRTQREAGQALDLLHQKLSAQTADEATQAALSEVRTLMMQCQHMVADQLGELE 268 Query: 388 ------------IRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIELSMTGSDTELDK 435 + D AL RM + + R+VRD+ L K + L + G+ T++D+ Sbjct: 269 TFDRRSVNLSQRLYDEALACRMRPFADGTHGYARMVRDVGHALGKSVRLEIIGNATQIDR 328 Query: 436 SMVERLADPLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRG 495 ++E+L P+ H++RNAIDHGIE +R AAGKP + + L A H +G ++V V DDG G Sbjct: 329 DILEKLEAPIGHLLRNAIDHGIENPQQRKAAGKPEQGLITLEARHSAGMLLVNVSDDGAG 388 Query: 496 MDRDRILEKAVAQGLVAPD--AELTDAEIYRCVFEPGFSTAQQVTELSGRGVGMDVVKRN 553 +D D++ + + L D A+L++AE+ + P FS VT++SGRGVG+DVV Sbjct: 389 IDLDQLRATIIERKLSNADTVAQLSEAELLEFLLLPSFSLRDTVTDISGRGVGLDVVSDM 448 Query: 554 IDALHGEVAIDTERGRGTVVRLRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQH 613 + + G + I + +GT +++LPLTL++I V + + PL V +++ Sbjct: 449 LKQVRGTIRISSTPQQGTRFQMQLPLTLSVIRSLLVTINEEPYAFPLAYVNRTLEL---- 504 Query: 614 NGTHIVSVRGEPLPFVPLRELFDLPAREQGRARKSLVIVQYGQLRA-------------- 659 R + L + ++ F R+ G + I+Q G+LRA Sbjct: 505 --------RRDQLAMLEGQQHFTFDGRQIGLV-SAHQILQKGELRAKDDLVSVVVIGDHE 555 Query: 660 ---GLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGRVALILDIPHLVHHTQQ 713 GL VD LGE V++PL GKV + ++ DG LILD+ +V ++ Sbjct: 556 HTYGLAVDDFLGERMLVVQPLDNRLGKVPNVLAGALMEDGDPVLILDVADMVRSVEK 612 >gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Janthinobacterium sp. Marseille] Length = 806 Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%) Query: 441 LADPLMHIVRNAIDHGIEPAAERIAAGKPAKATLRLNAMHESGSVVVEVMDDGRGMDRDR 500 L D MH++RNA+DHGIE R+A GKP + L + + + + DDGRG+ R Sbjct: 624 LKDVFMHLIRNAMDHGIETPEVRVALGKPEAGKISLGMDMDEKMLNITLRDDGRGLALKR 683 Query: 501 ILEKAVAQGLV-APDAELTDAEIYRCVFEPGFSTAQQVTELSGRGVGMDVVKRNIDALHG 559 I + A+ +GL APD +L D R + + GFSTA +V+E+SGRGVGMD V + +G Sbjct: 684 IRQIALDKGLSDAPD-QLDDLAAARLILQAGFSTADKVSEVSGRGVGMDAVLAFVSRENG 742 Query: 560 EVAI 563 + I Sbjct: 743 SIDI 746 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,525,893 Number of extensions: 62193 Number of successful extensions: 248 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 240 Number of HSP's successfully gapped: 6 Length of query: 731 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 641 Effective length of database: 888,291 Effective search space: 569394531 Effective search space used: 569394531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)