BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0585.p (122 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 120 3e-29 gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthi... 97 4e-22 gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 86 5e-19 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 72 9e-15 gi|152982173|ref|YP_001354646.1| PilG twitching motility two-com... 72 9e-15 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 120 bits (300), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 55/120 (45%), Positives = 81/120 (67%) Query: 1 MEKSILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLD 60 M K+IL VDDS SLRQ + +L++AGY V EA DG+ L K + F+LV++D NMP +D Sbjct: 1 MAKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLV 120 G S +R ++ + Y+ P+++LTTESS+ K +G+AAG W+ KPF P L + V K++ Sbjct: 61 GFSLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 121 Score = 96.7 bits (239), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 5 ILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDG-RKFNLVISDLNMPHLDGLS 63 IL+VDDS ++R + LK V A DGR L+K+ G LVISD+NMP++DGL+ Sbjct: 4 ILVVDDSATVRNEVGDFLKKNDLDVVLAVDGRDGLAKMKGDSSIKLVISDVNMPNMDGLT 63 Query: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLV 120 +++ +IMLTTE+S K+ GKAAGI+ W+ KPF+ +L KLV Sbjct: 64 MAEKIRSELGNSSVNIIMLTTENSPMMKERGKAAGIKGWIVKPFKGDAVLATFKKLV 120 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 86.3 bits (212), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 5 ILIVDDSFSLRQTISAALKSAGY-HVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGLS 63 L+VDD ++R+ + LK GY +V+EA DG AL+KL +F+ V+SD NMP++DGL+ Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNMPNMDGLT 67 Query: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLVQ 121 ++ ++ PA PV+M+T E+ + AG +V KPF L + +AK+ + Sbjct: 68 MLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIFE 125 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 72.4 bits (176), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KSILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGL 62 K +L+VDDS ++R+ L + GY V A DG + + F+LVI+D++MP +DG+ Sbjct: 635 KKVLVVDDSLTVRELERKLLSNCGYQVVVAVDGMDGWNAVRTEHFDLVITDIDMPRMDGI 694 Query: 63 SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHK-PFQPPVLLDAVAKLV 120 V ++Q + PV++++ + E +Q G AG + K F LL AV L+ Sbjct: 695 ELVSLIRQAANLQSLPVMIVSYKDREEDRQRGLDAGADYYFTKSSFHDESLLQAVVDLI 753 >gi|152982173|ref|YP_001354646.1| PilG twitching motility two-component system response regulator [Janthinobacterium sp. Marseille] Length = 133 Score = 72.0 bits (175), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 61/112 (54%) Query: 5 ILIVDDSFSLRQTISAALKSAGYHVEEATDGRQALSKLDGRKFNLVISDLNMPHLDGLSF 64 I+++DDS ++R++ L AGY V A DG AL+K++ + L+ D+ MP LDG Sbjct: 12 IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHRPALIFCDILMPRLDGYQT 71 Query: 65 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAV 116 +K+ + TPVIML+++ + G G A++ KPF LL V Sbjct: 72 CALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTV 123 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 255,870 Number of extensions: 8598 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 19 Length of query: 122 Length of database: 1,221,021 Length adjustment: 72 Effective length of query: 50 Effective length of database: 954,837 Effective search space: 47741850 Effective search space used: 47741850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)