BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0581.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980156|ref|YP_001354568.1| 3-methyl-2-oxobutanoate hydroxy...   394   e-111

>gi|152980156|ref|YP_001354568.1| 3-methyl-2-oxobutanoate
           hydroxymethyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 272

 Score =  394 bits (1012), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 177/275 (64%), Positives = 232/275 (84%), Gaps = 3/275 (1%)

Query: 1   MAGYLQESGAVRAKPVTTHTLQALRAKGEKITMLTCYDASFATLMERAGLETVLIGDSLG 60
           M+ YLQE+   R K VT  +L A++ +GEKITMLT YDASFA++M+  G+E +LIGDSLG
Sbjct: 1   MSSYLQEA---RTKAVTIPSLLAMKERGEKITMLTAYDASFASMMDTCGVEMILIGDSLG 57

Query: 61  MVSQGHDSTLPVTIQDMAYHTAAVARGTRTMLIIADLPFGTYPSREDAFRNAALLMQAGA 120
           MV QGH+STLPVTI+D+AYHTA VARG++T  +++D+PFG+Y ++E+AF+NA  L+QAGA
Sbjct: 58  MVCQGHNSTLPVTIEDVAYHTACVARGSKTAFVMSDMPFGSYATKEEAFKNAVKLVQAGA 117

Query: 121 QMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADAL 180
           QM+K+EGG W+ADT++FLTER IPV  H+GLTPQ VHQ GG+KVQGKT++ A ++ ++AL
Sbjct: 118 QMVKIEGGAWMADTVRFLTERAIPVMVHLGLTPQFVHQFGGYKVQGKTAEAAEKMKSEAL 177

Query: 181 AVQQAGASLVVIEAVPAALGKEVTDRLAVPTIGIGAGPDCSGQVLVMHDMLGVFPGHKSR 240
            +Q+AGA ++++EA+PA+LGKE+T+ + +PTIGIGAGPDCSGQVLV+HD + VFPG K+R
Sbjct: 178 LLQEAGADMLLLEAIPASLGKELTELVKMPTIGIGAGPDCSGQVLVLHDYINVFPGKKAR 237

Query: 241 FVRNFMEGASGIEDAVRRYVAAVKDGSFPAQEHCF 275
           FVRNFMEG + IE A R YVAAVKDGSFPA EHCF
Sbjct: 238 FVRNFMEGQTSIEGATRAYVAAVKDGSFPAPEHCF 272


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 656,098
Number of extensions: 27280
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)