BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0580.p (376 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980481|ref|YP_001354572.1| molecular chaperone DnaJ (heat ... 645 0.0 gi|152982311|ref|YP_001353594.1| curved DNA-binding protein [Jan... 158 5e-40 gi|152982819|ref|YP_001353637.1| curved DNA-binding protein [Jan... 127 1e-30 >gi|152980481|ref|YP_001354572.1| molecular chaperone DnaJ (heat shock protein) [Janthinobacterium sp. Marseille] Length = 374 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/376 (85%), Positives = 342/376 (90%), Gaps = 2/376 (0%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 MAKRDFYE+LG+ K+ASD+EIKKAYRKLAMK+HPDRNPDSKGAEDKFKE KEAYEMLSDP Sbjct: 1 MAKRDFYEILGVGKSASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDP 60 Query: 61 QKREAYDRYGHAGVDPNMGAGGAAGAGGFADAFGDIFGDIFGGGGGGRGRNAGPQVYRGA 120 QKR+AYDRYGHAGVDPNMG GG G A DIFGDIFG GGGRG GPQVYRGA Sbjct: 61 QKRDAYDRYGHAGVDPNMGGGGGGGGFADAFG--DIFGDIFGQAGGGRGGRGGPQVYRGA 118 Query: 121 DLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPVTCTTCGGHGQVRMQQG 180 DLRYNLEITLEQAAHG+DTTIRVPSWD C+TC GSGAKPGTSPV CTTCGGHGQVRMQQG Sbjct: 119 DLRYNLEITLEQAAHGYDTTIRVPSWDNCETCDGSGAKPGTSPVNCTTCGGHGQVRMQQG 178 Query: 181 FFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPEGIDDGMRIRSSGNGEPG 240 FFS+ QTCPKCHGSGKI P PC TC+GAG+IKRNKTLEVKIP GIDDGMRIRSSGNGEPG Sbjct: 179 FFSVLQTCPKCHGSGKINPSPCGTCSGAGKIKRNKTLEVKIPSGIDDGMRIRSSGNGEPG 238 Query: 241 VNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGEIEAPTLNGKASFSIPE 300 +NGGPPGDLYVEI IK H +FQRDGDDLHCE+PISFAKAALGGEIE PTLNGKASF+IPE Sbjct: 239 MNGGPPGDLYVEIRIKQHPMFQRDGDDLHCEIPISFAKAALGGEIEVPTLNGKASFTIPE 298 Query: 301 GTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKLTERQKELLREFEQLTTEGGAKH 360 GTQSGKTFRLR KGIKGVRSGY GDLFCHV+VETPV LTERQKEL+REFEQLT EGG+KH Sbjct: 299 GTQSGKTFRLRSKGIKGVRSGYAGDLFCHVIVETPVTLTERQKELMREFEQLTIEGGSKH 358 Query: 361 SPQTKTWKDKVKEFFE 376 SPQTK+WKDKVKEFFE Sbjct: 359 SPQTKSWKDKVKEFFE 374 >gi|152982311|ref|YP_001353594.1| curved DNA-binding protein [Janthinobacterium sp. Marseille] Length = 314 Score = 158 bits (400), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 180/367 (49%), Gaps = 79/367 (21%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 M +D+YE LG+ ++A+ DEIK AYRKLA K+HPD + ++ AE +FKE+ EAY++L DP Sbjct: 1 MKFKDYYETLGVKRDATQDEIKNAYRKLARKFHPDVSKEAD-AEARFKEMGEAYKVLKDP 59 Query: 61 QKREAYDRYG---HAGVD----PNMGAG----GAAGAGGFADA--FGDIFGDIFG---GG 104 +KR +YD+ G G D PN AG G GF ++ FGD F +FG G Sbjct: 60 EKRASYDQLGANWQNGQDFQPPPNGDAGFEFSGRGSHPGFGESSDFGDYFEQMFGHQTGW 119 Query: 105 GGGRGRNAGPQVYRGADLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPV 164 G RGR Q G D ++I LE A +G + +I Sbjct: 120 GRSRGRAMHAQ---GEDHHAKVQIDLEDAYNGAERSI----------------------- 153 Query: 165 TCTTCGGHGQVRMQQGFFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPEG 224 +RM P SG +I +++TL V IP+G Sbjct: 154 ---------SLRM-----------PVVDESGHVI-------------TKDRTLSVTIPKG 180 Query: 225 IDDGMRIRSSGNGEPGVNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGE 284 I G +R +G G PG+ G GDLY+EI +PH ++ DG D++ ++P++ +AALG Sbjct: 181 IRAGQTLRLAGQGGPGIGEGKAGDLYLEITFRPHPRYRVDGRDVYLDLPLAPWEAALGAN 240 Query: 285 IEAPTLNGKASFSIPEGTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKLTERQKE 344 + PT G +IP + SG+ RL+GKGI G + GDL+ + + P +E K Sbjct: 241 VTVPTPAGSVELTIPANSSSGRKLRLKGKGIPGKEA---GDLYVVLSIALPPANSEEAKA 297 Query: 345 LLREFEQ 351 R +Q Sbjct: 298 AYRTLQQ 304 >gi|152982819|ref|YP_001353637.1| curved DNA-binding protein [Janthinobacterium sp. Marseille] Length = 325 Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 155/367 (42%), Gaps = 85/367 (23%) Query: 1 MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60 M +D Y LG+ ++A+ D IK AYRKLA KYHPD + + AE +FKEV EAY +L D Sbjct: 1 MKFKDHYATLGIPRDATQDAIKNAYRKLARKYHPDVSREMY-AELRFKEVGEAYAILKDT 59 Query: 61 QKR--------------EAYDRYGHAGVDPNMGA---------GGAAGAGGFADAFGDIF 97 KR EA + A P A A + F +I Sbjct: 60 AKRMAYDLEYRPAFNYREASAKRAQAQPQPQTSAPPRNAAPKEPPPAAKPRAEEHFSNIL 119 Query: 98 GDIFGGGGGGRGRNAGPQVYRGADLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGA 157 ++ G G G ++ G+D ++I LE DT HG+ Sbjct: 120 DEMMGRPGPATPPKRGVHIH-GSDQHTKVQIDLE------------------DTYHGTS- 159 Query: 158 KPGTSPVTCTTCGGHGQVRMQQGFFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTL 217 C+ S +P T G I +TL Sbjct: 160 ---------------------------------CNVS---MPTYMTDDYGMP-IVSKRTL 182 Query: 218 EVKIPEGIDDGMRIRSSGNGEPGVNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFA 277 +V IP+G+ G +R +G G PG G GDLY+EI I+PH ++ DG D++ ++P++ Sbjct: 183 KVSIPKGMRSGQTLRLAGQGFPGTGEGKAGDLYLEIVIRPHRRYRVDGRDIYVDVPLTSI 242 Query: 278 KAALGGEIEAPTLNGKASFSIPEGTQSGKTFRLRGKGIKGVRSGYPGDLFCHVV-VETPV 336 A G + PT G +IP G+ G+ RL+GKGI G PGD++ + V P+ Sbjct: 243 SAEQGTVVHVPTPEGSVQLAIPPGSSIGRKLRLKGKGIPG---DPPGDMYAVITKVSQPI 299 Query: 337 KLTERQK 343 QK Sbjct: 300 HTAVAQK 306 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 823,781 Number of extensions: 32584 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 5 Length of query: 376 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 291 Effective length of database: 906,776 Effective search space: 263871816 Effective search space used: 263871816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)