BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0578.p (646 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janth... 1117 0.0 gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthin... 433 e-122 gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein [Jant... 64 3e-11 >gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janthinobacterium sp. Marseille] Length = 650 Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 577/648 (89%), Positives = 605/648 (93%), Gaps = 2/648 (0%) Query: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60 MGKIIGIDLGTTNSCVA+MEG +PKVIENSEGARTTPS+IAYQEDGEILVGAPAKRQAVT Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60 Query: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120 NPKNT+YA KRLIGRKF EKEVQKDI +MPYQIV ADNGDAWI VRDKKLA QISAE+L Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAAQQISAEIL 120 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LDK KGDRKIAVYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQR+IDY Sbjct: 181 LDKGGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY 240 Query: 241 IIEEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 II+EFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 Query: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 ITRAKLESLVEELI+KTIEPCRTAIKDAGVKVSDIDD+ILVGGMTRMPKV E VK+FFGK Sbjct: 301 ITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQETVKDFFGK 360 Query: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420 DPR+DVNPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIET+GGVMTKMI+KNTTIP Sbjct: 361 DPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420 Query: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480 TKFSQVFSTADDNQPAVTIKV+QGEREMA GNKALGEFNLEGIPP+ RGTPQIEVTFDID Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480 Query: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAESRNQG 540 ANGILHVGAKDKATGKENKITIKANSGL EEEI+KMV+DAEANAEEDKRLKELAE+ NQG Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKELAEAHNQG 540 Query: 541 DALVHSTRKALGEYGDKLEAGEKDVIEAAIKNLEEALKGDDKAAIDAKTEALSTAAQKLG 600 DALVHSTRKAL EYGDKLEAGEK+ IEAAI LEEALKG DKAAID K+ A++TAAQKLG Sbjct: 541 DALVHSTRKALTEYGDKLEAGEKEKIEAAIAELEEALKGSDKAAIDEKSAAVTTAAQKLG 600 Query: 601 EKMYADQQAQAAAAGGAAGAAGAQA--GAAGAAPKDDNVVDADFKEVK 646 EKMYAD QAQ AA A A A + P+ D+VVDADFKEVK Sbjct: 601 EKMYADMQAQQAAGAAGGDAGAGDAGHSHADSKPQQDDVVDADFKEVK 648 >gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthinobacterium sp. Marseille] Length = 620 Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/618 (42%), Positives = 394/618 (63%), Gaps = 32/618 (5%) Query: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVTNPKN 64 +GIDLGTTNS VA + + P+V+ + EG PS++ Y ++G +G A T+PKN Sbjct: 22 VGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYMKNGHAQIGYKALAAQNTDPKN 81 Query: 65 TIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLA----PPQISAEVL 120 TI + KR +GR K++ NL PY + D V+ K +A P +ISAE+L Sbjct: 82 TIASVKRFMGRGL--KDIAYVENL-PYDFL-----DTPGMVQLKTVAGVKSPVEISAEIL 133 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 +++ AED LG+E+ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+A+G Sbjct: 134 ATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAIAYG 193 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LD +G AVYDLGGGTFDVSI+++ + FEVLST GD+ LGG+DFD RL+ + Sbjct: 194 LDNGSEG--VFAVYDLGGGTFDVSILKLT----KGVFEVLSTGGDSALGGDDFDHRLLCW 247 Query: 241 IIEEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 IIE+ K LS + +++ +K+ AK LS+ +T I+ A+ +G VHL Sbjct: 248 IIEQAKLSP---LSDEDLSVLMVKS--REAKELLSTKAETHIDA---ALGSGEEVHLT-- 297 Query: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 +T A + + L+AKTI P + A++DA + V D+D V++VGG TRMP + + V EFF Sbjct: 298 VTAADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIRKAVGEFFQA 357 Query: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRK---DVLLLDVTPLSLGIETMGGVMTKMIKKNT 417 P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIETMGG++ K+I +N+ Sbjct: 358 TPLANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNS 417 Query: 418 TIPTKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKALGEFNLEGIPPAPRGTPQIEVTF 477 TIP +Q F+T D Q A+ I + QGERE+ + ++L F L GIPP G +I VT+ Sbjct: 418 TIPCARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTY 477 Query: 478 DIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAESR 537 +DA+G+L V A++ +G E I++K + GL +++I +M++D+ +A+ D L+ L E + Sbjct: 478 QVDADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDMALRALREEQ 537 Query: 538 NQGDALVHSTRKALGEYGDKLEAGEKDVIEAAIKNLEEALKGDDKAAIDAKTEALSTAAQ 597 + + +V +T+ AL G L E++ + + + ++++ KGDD AI A EAL+ + Sbjct: 538 VEAERIVLATQSALDADGALLTDDERNAVTSLLAAVQQSSKGDDHHAIKAAVEALAQGTE 597 Query: 598 KLGEKMYADQQAQAAAAG 615 + + D+ + A +G Sbjct: 598 EFAARRM-DRSVRTALSG 614 >gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein [Janthinobacterium sp. Marseille] Length = 416 Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 93/436 (21%), Positives = 168/436 (38%), Gaps = 87/436 (19%) Query: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGE-ILVGAPAKRQAV 59 M G+D GT+NS V +++ +G T PS++ + D E + G A + Sbjct: 1 MANACGVDFGTSNSTVGWSRPGHSALLQLEDGKVTLPSVVFFNADEEQVYYGRAALANYL 60 Query: 60 TNPKNTIY-AAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAE 118 + + + K L+G + + + V K L + + Sbjct: 61 QGYEGRLMRSLKSLLGTSLIDDQTE---------------------VMGKALPFRTLLTQ 99 Query: 119 VLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQA-------TKDAGRIAGLDVKRIINE 171 + ++K AE G E + V+ P YF D +A + + G E Sbjct: 100 FIAELKHRAETAAGREFSSVVMGRPVYFVDGNEEADILAEDTLYEIAQSVGFKDIDFQYE 159 Query: 172 PTAAALAF--GLDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEK---QFEVLSTNGDT 226 P AAA + +DK E + + D+GGGT D S++ ++ +K + ++L+T G Sbjct: 160 PIAAAFDYESQIDKEE----LVLIADIGGGTSDFSLVRLSPERAKKVDRRDDILATGG-I 214 Query: 227 FLGGEDFDQRL------------------------IDYIIEEFKKINGLDLSKDAIALQR 262 +GG DFD+ L + + + IN K + ++ Sbjct: 215 HIGGTDFDKYLSLTSIMPLLGLGSRLNNNTEVPSSYYFNLATWHTINLAYTQKAWLQIKD 274 Query: 263 IKASAERAKIELSSSQQTEIN-----------EPYIAMANGAPVHL---------NLKIT 302 I A R K +L S N E IA+++ L L + Sbjct: 275 IYRDA-RDKTKLDSLLHLIENRSGHWLALKAEEGKIALSSALETELLLDRIAPSTTLTLR 333 Query: 303 RAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGKDP 362 R + ++ ++++++ +KDAG+ D+D V+ GG + + + EK+ D Sbjct: 334 RDEFDNAIDKMVSSVEGTVANLLKDAGIAAEDVDTVVFTGGSSGVQLLREKISSLL-PDA 392 Query: 363 RRDVNPDEAVAVGAAI 378 RR V D ++GA + Sbjct: 393 RR-VEGDLFGSIGAGL 407 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.131 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,403,177 Number of extensions: 60602 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 4 Length of query: 646 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 557 Effective length of database: 891,988 Effective search space: 496837316 Effective search space used: 496837316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)