BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0577.p
         (194 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979806|ref|YP_001354574.1| molecular chaperone GrpE (heat ...   235   2e-63

>gi|152979806|ref|YP_001354574.1| molecular chaperone GrpE (heat
           shock protein) [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  235 bits (599), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 136/160 (85%)

Query: 35  AAAAAPAEPTLEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAE 94
           A AA+   PTLEE+LAA++    E+QD+FLRA+AE EN RRRAQED+ +AHKFAIEGFAE
Sbjct: 20  AEAASATTPTLEEQLAASQLLVQELQDSFLRAKAEVENFRRRAQEDVTRAHKFAIEGFAE 79

Query: 95  SLLAVKDSLEMALKIENASLESLKEGVDMTLKQLTSAFEKNKLQEVSPQAGEKLDPMKHQ 154
            LL VKDSLEMAL++E  S+ESLKEGV+MTLKQL +AFEKN+L E+ PQ G+KLDPMKHQ
Sbjct: 80  MLLPVKDSLEMALQVETPSVESLKEGVEMTLKQLNAAFEKNRLLEIKPQQGDKLDPMKHQ 139

Query: 155 AVSAVPAEQEANTVVAVLQKGYMISERLLRPALVTVAQGK 194
           A+S VPA+QE NTVV  LQKGY+I++RLLRPALVTVAQ K
Sbjct: 140 AMSLVPADQEPNTVVNTLQKGYLIADRLLRPALVTVAQEK 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.307    0.119    0.299 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 254,281
Number of extensions: 7451
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 116
Effective length of database: 932,655
Effective search space: 108187980
Effective search space used: 108187980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)