BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0574.p
         (548 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980340|ref|YP_001354576.1| RecN DNA repair protein [Janthi...   859   0.0  

>gi|152980340|ref|YP_001354576.1| RecN DNA repair protein
           [Janthinobacterium sp. Marseille]
          Length = 548

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/548 (77%), Positives = 480/548 (87%)

Query: 1   MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60
           MLRTL+IRDFVIVDAIELEFA GFSVFTGETGAGKSILIDALALA+GGRGD SVVREGAA
Sbjct: 1   MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60

Query: 61  KADVSADFTATPEVMAWLQEQELAAEHDGVLLRRVIDNAGRSKAYINGSAATAAQLRQVG 120
           KAD++A+F+A+ E+ AWL E E + E  G LLRRVIDN GRSKA+ING  ATA QLR++G
Sbjct: 61  KADITAEFSASAELDAWLAENEFSNEDGGALLRRVIDNTGRSKAFINGIVATATQLRELG 120

Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180
           E LVDIHGQHAHQSL+K DAQR LLD+QAGL ++ + VAA+YKTWRALARQRE+FE +A+
Sbjct: 121 EKLVDIHGQHAHQSLLKTDAQRVLLDNQAGLQDEVKAVAAAYKTWRALARQREEFETNAK 180

Query: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISAEHSRLSHAAALIGGAQEALGVISESESPI 240
           NVLLERERLEWQV EL KLAVKPGEW +IS EHSRLSHAA+LI GAQEAL +ISE+++P+
Sbjct: 181 NVLLERERLEWQVGELEKLAVKPGEWTDISNEHSRLSHAASLIEGAQEALNLISEADTPM 240

Query: 241 LSQLSSITQKLSKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300
           LSQLSS+  ++ KLVD+D  L+PVLDALEPA+IQLQEAVYALNDYL RVELDPARL+EVE
Sbjct: 241 LSQLSSLNTRIGKLVDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREVE 300

Query: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRVQEEKLKAAYLTLAQK 360
            RLE IHS +RKF V  D+LP+E   LS QLKQLADASDLDALR QEEKLKAAY + AQK
Sbjct: 301 VRLENIHSASRKFRVAADDLPQELETLSAQLKQLADASDLDALRAQEEKLKAAYTSAAQK 360

Query: 361 LSKARAKAAASLGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420
           L+KAR+KAA +LG+AVTAAMQ+LSM GG+F IAL   EPA+YGLEQ+EF+VA HAG  PR
Sbjct: 361 LTKARSKAAKALGDAVTAAMQELSMTGGKFAIALQPCEPASYGLEQIEFMVAAHAGTTPR 420

Query: 421 ALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQERQ 480
            LAKVASGGELARI+LAISVI S+AT  PTLIFDEVDSGIGG VAEVVGRLL+RLGQ+RQ
Sbjct: 421 PLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDRQ 480

Query: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540
           VLCVTHLPQVASQANQH+QV K+S  GKT+S ID LD+ ARVEEIARMLGGLEITATTR 
Sbjct: 481 VLCVTHLPQVASQANQHFQVSKQSSNGKTVSSIDALDSNARVEEIARMLGGLEITATTRS 540

Query: 541 HARELLAS 548
           HARELLA+
Sbjct: 541 HARELLAN 548


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,158,717
Number of extensions: 45264
Number of successful extensions: 295
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 460
Effective length of database: 895,685
Effective search space: 412015100
Effective search space used: 412015100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)