BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0569.p
         (188 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982000|ref|YP_001354581.1| hypothetical protein mma_2890 [...   152   2e-38

>gi|152982000|ref|YP_001354581.1| hypothetical protein mma_2890
           [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  152 bits (383), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 89/119 (74%), Gaps = 2/119 (1%)

Query: 44  SGVKVTGKSSSLFGFLRPYRIDIQQGNFVSKEMVAQLRPGLTRDQVRFVLGTPLLTDMFH 103
           SGV+V  +     G   PYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGTPLLTD+FH
Sbjct: 136 SGVQVK-REKRFLGIFSPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLTDVFH 194

Query: 104 SNRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITD-AKVGSK 161
            +RWDY FR+ KGNGEI +SRVTV FKD L+   +GG DLPTE +YL  I D AK  +K
Sbjct: 195 GDRWDYAFRMQKGNGEITSSRVTVHFKDKLVSSFEGGGDLPTEKDYLARIADKAKAANK 253


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 425,580
Number of extensions: 16681
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 110
Effective length of database: 932,655
Effective search space: 102592050
Effective search space used: 102592050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)