BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0568.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979802|ref|YP_001354582.1| dihydrodipicolinate reductase [...   407   e-115

>gi|152979802|ref|YP_001354582.1| dihydrodipicolinate reductase
           [Janthinobacterium sp. Marseille]
          Length = 268

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/268 (78%), Positives = 232/268 (86%)

Query: 1   MTALNIAVAGASGRMGRMLIEAILNADDLKLSGTLDTPSAPTLDSDAGLFLGKTTGVIIE 60
           M  L IAVAGASGRMG MLIE IL A D  L+G LD  ++P + SDA  FLGK  GV+IE
Sbjct: 1   MNQLKIAVAGASGRMGHMLIETILEAQDATLTGALDIAASPAVGSDAAAFLGKPAGVLIE 60

Query: 61  SDLARGLAGADVLIDFTRPEGTLKHLQYCAEHGVKVVIGTTGFEPEGKTAIAEFAKRIAI 120
           SD A+GLA ++ LIDFTRPEGTL+HL+YCA H +K++IGTTGF+  GK AIA  A++ AI
Sbjct: 61  SDFAKGLANSEFLIDFTRPEGTLQHLEYCAAHNIKMIIGTTGFDAAGKAAIAAAAEKTAI 120

Query: 121 MAAPNMSVGVNVTMKLLEMAAKNFSHGYDIEIIEAHHRHKVDAPSGTALKMGEVIADALG 180
           M APNMSVGVNVTMKLLEMAAKNFS GYDIEIIEAHHRHKVDAPSGTA+KMGEVIA ALG
Sbjct: 121 MFAPNMSVGVNVTMKLLEMAAKNFSEGYDIEIIEAHHRHKVDAPSGTAIKMGEVIAGALG 180

Query: 181 KKLDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY 240
           K+L+DVAV+AREGVTG RDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY
Sbjct: 181 KELNDVAVWAREGVTGARDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY 240

Query: 241 AMGSLRAARFLADKPSGLYDMQDVLGFK 268
           A GSLRAARFLADK +GLYDMQDVLG +
Sbjct: 241 AHGSLRAARFLADKKTGLYDMQDVLGLR 268


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 654,078
Number of extensions: 29530
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)