BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0567.p (231 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel f... 356 e-100 gi|152981614|ref|YP_001352054.1| biopolymer transport protein Ex... 200 6e-53 gi|152981708|ref|YP_001351935.1| biopolymer transport protein Ex... 162 2e-41 gi|152980246|ref|YP_001354154.1| biopolymer transport protein [J... 89 2e-19 gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthin... 62 2e-11 >gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] Length = 230 Score = 356 bits (913), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/226 (77%), Positives = 198/226 (87%), Gaps = 3/226 (1%) Query: 2 EPNVGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNALEQFWQAPT 61 + +G AHYWAQGDAVSHSVAY+LLIMSI SWYYILSKAW++ RIR+ + AL+ FWQAPT Sbjct: 7 DQGLGLAHYWAQGDAVSHSVAYVLLIMSILSWYYILSKAWSSWRIRKSAAALDGFWQAPT 66 Query: 62 LADASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELITRTLRREINR 121 L DA A ++R DSE +YTP+A ++ EAA+I + A SLNA TDP ELITRTLR+EINR Sbjct: 67 LTDAIATIRRSDSENVYTPLAAQSVEAANI---KPHANSLNANTDPGELITRTLRQEINR 123 Query: 122 VSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 181 VS+RLE GLTLLASVGSTAPF+GLFGTVWGIYHALVAVS+SGT+QIDKVAGPVGEALIMT Sbjct: 124 VSSRLETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSSGTIQIDKVAGPVGEALIMT 183 Query: 182 ALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVG 227 ALGL VAIPAVLAYNAFTR+NRV LAELD FAHDLHAYLTTG RVG Sbjct: 184 ALGLAVAIPAVLAYNAFTRVNRVTLAELDAFAHDLHAYLTTGARVG 229 >gi|152981614|ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 242 Score = 200 bits (509), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 141/221 (63%), Gaps = 6/221 (2%) Query: 6 GFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNAL-EQFWQAPTLAD 64 G W+QGD V+ VA LL+ MSIASWY I +KA ++ RR + A +FW A +L + Sbjct: 7 GLESLWSQGDFVTKGVAVLLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWDATSLTE 66 Query: 65 ASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELITRTLRREINRVSA 124 +A L + + +AE A +G L+ S+ IT +LR+ I+ SA Sbjct: 67 GTA---TLGNGNPFADIAEAGVTAMRHHEAHKG--HLHDQLSVSDWITLSLRQAIDETSA 121 Query: 125 RLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALG 184 +L+ G+ +LASVGSTAPFVGLFGTVWGIYHALVA+ SG IDKVAGPVGEALIMTALG Sbjct: 122 KLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTALG 181 Query: 185 LLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGER 225 L VAIPA YNA R N+ V+A+++ F DLHA TG R Sbjct: 182 LAVAIPATFGYNALVRGNKSVIAKMNKFGFDLHALFVTGSR 222 >gi|152981708|ref|YP_001351935.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 279 Score = 162 bits (409), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 10/216 (4%) Query: 6 GFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNALEQ-FWQAPTLAD 64 G + W D V+ +LL+ SI SWY I++K ++ + + E+ FW D Sbjct: 64 GISALWNGSDFVAKGTLLILLLFSIGSWYIIVAKLLAQRKLHKQARDTERTFW------D 117 Query: 65 ASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELITRTLRREINRVSA 124 A Q LD+ + TP A G L A D + + ++L ++ V Sbjct: 118 AGTVRQGLDTLESGTPFHFIGTLALKATEHHSG---LLAHVDFNTWVVQSLHSSVDTVKN 174 Query: 125 RLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALG 184 RL+ GL LA+VGSTAPFVGLFGTVWGIYHAL A+ SG IDKVAGPVGEALIMTA+G Sbjct: 175 RLQDGLAFLATVGSTAPFVGLFGTVWGIYHALTAIGLSGQASIDKVAGPVGEALIMTAIG 234 Query: 185 LLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYL 220 L VA+PAVL YN R N+ L ++ F+ LHA L Sbjct: 235 LAVAVPAVLGYNLLVRRNKAALEKVQDFSSTLHAVL 270 >gi|152980246|ref|YP_001354154.1| biopolymer transport protein [Janthinobacterium sp. Marseille] Length = 230 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 106/237 (44%), Gaps = 27/237 (11%) Query: 4 NVGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWTALRIRRGSNALEQ-FWQAPTL 62 ++ F H + V LLL +S+ SW YI K + R + E+ FW L Sbjct: 6 DLSFVHLITNASVLVQLVMALLLGVSVMSWTYIFRKMFAIKNARAQTEEFERAFWSGGDL 65 Query: 63 A----DASAAMQRLDSEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPSELI------- 111 +AS+ ++ + T ER EA G N A ++ Sbjct: 66 NTLYLEASSNRRKNNGS---TGALERIFEA--------GMSEFNKAKGSNDSFHVSARLD 114 Query: 112 --TRTLRREINRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDK 169 R +R R LE L LASVGS +P+VGLFGTVWGI +A ++ + Sbjct: 115 GARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAA 174 Query: 170 VAGPVGEALIMTALGLLVAIPAVLAYNAFTR-INRVVLAELDGFAHDLHAYLTTGER 225 VA + EALI TA+GL AIPAV+AYN ++ I+R+ + + F + L R Sbjct: 175 VAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAI-RFESFVEEFSNILQRQTR 230 >gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthinobacterium sp. Marseille] Length = 591 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 11/208 (5%) Query: 21 VAYLLLIMSIASWYYILSKAWTALRIRRGSNA--LEQFWQ---AP--TLADASAAMQRLD 73 V LL +M + SW ++SK I R +NA ++ F + AP LA++S Q + Sbjct: 370 VVILLGVMMVLSWAIMISKGRNYGAISR-ANAIFMDHFRETAGAPLDQLANSSKLPQDVK 428 Query: 74 SEQIYTPMAERAAEAADIGSRQQGAPSLNAATDPS-ELITRTLRREINRVSARLERGLTL 132 ++ + + A + ++ R LNA ++ + I + + R + R+ + Sbjct: 429 ADSSLWRLYKVAVD--EMRRRHDRGYDLNAVSNATISAIRAAMDGVMVRENERMSHRMNW 486 Query: 133 LASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLVAIPAV 192 L++ AP+VGLFGTV GI V + +G V I+ VA + AL+ TA GL VAIPA+ Sbjct: 487 LSTAIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLGVAIPAL 546 Query: 193 LAYNAFTRINRVVLAELDGFAHDLHAYL 220 YN + + A++ F + L Sbjct: 547 FGYNWLASRSDAIGADMAVFVDEFATRL 574 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 534,426 Number of extensions: 20282 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 5 Length of query: 231 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 151 Effective length of database: 925,261 Effective search space: 139714411 Effective search space used: 139714411 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)