BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0566.p (147 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981671|ref|YP_001354584.1| biopolymer transport protein Ex... 205 8e-55 gi|152980542|ref|YP_001352053.1| biopolymer transport protein Ex... 154 1e-39 gi|152981777|ref|YP_001351936.1| biopolymer transport protein Ex... 128 2e-31 gi|152981856|ref|YP_001351937.1| biopolymer transport protein Ex... 112 1e-26 gi|152980805|ref|YP_001354155.1| biopolymer transport protein To... 61 3e-11 >gi|152981671|ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 142 Score = 205 bits (522), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 94/142 (66%), Positives = 124/142 (87%), Gaps = 1/142 (0%) Query: 1 MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEK 60 M+FGGFND Q + PMADINVTPMVDVMLVLLVIFIITAP+FTHA+KLDLP+AQS+PAP + Sbjct: 1 MAFGGFNDKQQAGPMADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTE 60 Query: 61 PETITLGIDAAGKLYWNDQPVSQAEMDTRLAAAAEKKPQPELQLRADKSTRYQTIAELMS 120 P TI+L I+ AG ++WN+ V+ +++TRLA AA+++PQP++QLRADK TRY+ IA++M+ Sbjct: 61 PTTISLSINGAGAVFWNNDAVTLDDLNTRLATAAKQQPQPQVQLRADKGTRYEVIAQVMA 120 Query: 121 AAQGAGLTKLGFVTD-PQASSK 141 +AQG G+TKLGFVT+ PQ++ K Sbjct: 121 SAQGNGITKLGFVTETPQSTKK 142 >gi|152980542|ref|YP_001352053.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 136 Score = 154 bits (390), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 73/135 (54%), Positives = 102/135 (75%), Gaps = 2/135 (1%) Query: 1 MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEK 60 M+ G +D + P +IN TP+VDVMLVLL+IFI+T P+ HA+KLDLP A + P K Sbjct: 1 MAMGSLSDEDDFNP--EINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPHAANQPNDVK 58 Query: 61 PETITLGIDAAGKLYWNDQPVSQAEMDTRLAAAAEKKPQPELQLRADKSTRYQTIAELMS 120 PETI + IDAAG++YWN++ + Q++M +R+A AA+ PQPEL LRAD+ T Y+ +A++M+ Sbjct: 59 PETINVSIDAAGQVYWNNEVLDQSQMLSRIADAAKVTPQPELHLRADRLTPYEKVAQVMA 118 Query: 121 AAQGAGLTKLGFVTD 135 AAQ GLTK+GFVT+ Sbjct: 119 AAQSGGLTKMGFVTE 133 >gi|152981777|ref|YP_001351936.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 142 Score = 128 bits (321), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 92/137 (67%), Gaps = 3/137 (2%) Query: 1 MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEK 60 + FG N + + +++IN TP+VDVMLVLL+IF+IT P+ T+ + ++LP ++ K Sbjct: 3 LIFG--NGGEEDSVVSEINTTPLVDVMLVLLIIFLITIPVVTNTIAVNLPHEENHVRETK 60 Query: 61 PETITLGIDAAGKLYWNDQPVSQAE-MDTRLAAAAEKKPQPELQLRADKSTRYQTIAELM 119 PE I L +D GK+YW+ + ++ AE + TRL A ++PQPE+Q+R D +Y+ I ++ Sbjct: 61 PENINLSVDKNGKIYWDQESIAGAEALTTRLKTVAVQQPQPEIQIRGDGDAKYEAIGRVI 120 Query: 120 SAAQGAGLTKLGFVTDP 136 A Q AG+ K+GF+T+P Sbjct: 121 FACQRAGIVKIGFITEP 137 >gi|152981856|ref|YP_001351937.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 143 Score = 112 bits (279), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 88/138 (63%), Gaps = 1/138 (0%) Query: 1 MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSPAPEK 60 MS G N + M+++N TP++DVMLVLL++ IIT P+ H ++L+LP P Sbjct: 3 MSVGSGNGSGEPEVMSEMNTTPLIDVMLVLLIMLIITIPIQLHNVELNLPAGNPPPQTVI 62 Query: 61 PETITLGIDAAGKLYWNDQPVSQAE-MDTRLAAAAEKKPQPELQLRADKSTRYQTIAELM 119 PE + + I+AAG + WN + ++ E +D++L+ AA + QPEL LRAD++ Y+ +A ++ Sbjct: 63 PEVVQVDINAAGVVSWNGEAINDREVLDSKLSGAAAQDVQPELHLRADRNAPYKAVAAVL 122 Query: 120 SAAQGAGLTKLGFVTDPQ 137 ++AQ G KLG V + Q Sbjct: 123 ASAQRLGANKLGLVGNEQ 140 >gi|152980805|ref|YP_001354155.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] Length = 146 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 15/147 (10%) Query: 1 MSF--GGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSSP-- 56 MSF G + ++INV P +DVMLVLLVIF++ AP+ T+ ++LP A S Sbjct: 1 MSFSSGSMRGGRTRKFKSEINVVPYIDVMLVLLVIFMVAAPL-TNPGVINLPNAAKSTLP 59 Query: 57 ---------APEKPETITLGIDAAGKLYWNDQPVSQAEMDTRLAAAAEKKPQPELQLRAD 107 P+ T+T+ GK + ++A + +L A +P+ + + AD Sbjct: 60 PTEYIRIDLRPDTSATLTIAGSKGGK-APTETAANRAALAQKLQAIHADRPELPVMISAD 118 Query: 108 KSTRYQTIAELMSAAQGAGLTKLGFVT 134 K+ +Y + + +S A+ G+ ++G T Sbjct: 119 KNIKYDEVIQAISEAKKLGIERVGLAT 145 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 341,531 Number of extensions: 13005 Number of successful extensions: 44 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 7 Length of query: 147 Length of database: 1,221,021 Length adjustment: 75 Effective length of query: 72 Effective length of database: 943,746 Effective search space: 67949712 Effective search space used: 67949712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)