BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0563.p (364 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 246 1e-66 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 241 5e-65 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 221 4e-59 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 154 1e-38 gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport sy... 146 2e-36 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 246 bits (629), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 145/319 (45%), Positives = 197/319 (61%), Gaps = 13/319 (4%) Query: 8 VSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGR 67 +SI ++ K F N AL + LD GE LLGPSGCGKTT LR+IAGLE PD G + Sbjct: 1 MSIEVKNIQKQFGNFV-ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG-Q 58 Query: 68 VFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAER------AER 121 V ED +A + +R VG VFQ+YALF +M+V ENIA+G+++R PAA R E+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVR--PAATRPSESQIKEK 116 Query: 122 VESLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 V LLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADF 241 L +L L +T+I+VTHDQ EA+ + D+IV+M +G + QIG P+++Y +PA+ FV F Sbjct: 177 RWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGF 236 Query: 242 IGAMNRVHGIVSGDRLLLPTGSLPLVDTLDAALQGQPACAMFRPEDVEVVDITEADAQCV 301 +G +N HG V +L + + A Q RP D+E VD A+ + Sbjct: 237 LGNVNLFHGRVHEG--ILQSSGIAFEAPEHAETQDTKGIGYVRPHDLE-VDRYTTGAEGI 293 Query: 302 RGKLINTFFLGDRTRFEIE 320 +L +G + E+E Sbjct: 294 VVQLRRAHAIGPLAQLELE 312 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 241 bits (615), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 133/299 (44%), Positives = 183/299 (61%), Gaps = 13/299 (4%) Query: 10 IRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGRVF 69 + ++ + F + T + + L I GE LLGPSGCGKTT LRMIAG + PD G++ Sbjct: 4 LEIRNLTRRFGDNT-VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPD-AGQIL 61 Query: 70 FGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMV 129 D+T +P E+R V VFQNYALFP+M+VG NIA+ +++ P AE ++V+ LE V Sbjct: 62 LDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDV 121 Query: 130 HLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLR 189 L G + R +LSGGQ+QRV++ARAL P++LLLDEPL+ALDA+LRE ++ +L L + Sbjct: 122 RLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK 181 Query: 190 SLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGAMNRVH 249 +GIT IYVTHDQ EA+AL RI VM +G++ Q+ P IY +P + FVADFIG N Sbjct: 182 EVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGTCNLFD 241 Query: 250 GIVS---GDRLLLPTGSLPLVDTLDA--ALQGQPACAMFRPEDVEVVDITEADAQCVRG 303 G+V+ G+ + L + V A G RPE T+ A+ VRG Sbjct: 242 GVVTQIDGNMMWLDVPGMGAVKAFTAPSVTVGSKGTIALRPEK------TQVSAEIVRG 294 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 221 bits (564), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 140/345 (40%), Positives = 199/345 (57%), Gaps = 22/345 (6%) Query: 26 LQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMGGRVFFGDEDV-----TALPI 80 + L + GE LLG SGCGKTT LR IAG E + GR+ G +++ T +P Sbjct: 30 VHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFE-SLIAGRITLGGKELSNAQHTTVP- 87 Query: 81 EKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMVHLQGLSHRRVD 140 E R VG+VFQ+YALFP++SV +NI +G+ RK+ AAER R+ LL +V LQ + Sbjct: 88 EARHVGVVFQDYALFPHLSVSDNIGFGL--RKLAAAERNGRINKLLALVGLQAQEKKFPH 145 Query: 141 QLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTH 200 +LSGGQ+QRVALARALA +P +LLLDEP + LD LRE + S++ +L+ +G TA+ VTH Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 205 Query: 201 DQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANEFVADFIGAMNRVHGIVSGDR--LL 258 DQ EA A+ D+I VM+ G I Q +Y+ PAN FVADFIG V G V R + Sbjct: 206 DQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIGLGVFVPGTVDKQRQDVA 265 Query: 259 LPTGSLPLVDTLDAALQGQPACAMFRPEDVEVV----DITEADAQCVRGKLINTFFLGDR 314 + G+LPL QG P C + V+V+ D+ D ++ ++I F G Sbjct: 266 IELGTLPLC-------QGLPVCEVDDQNAVDVLLRADDVIHDDNSPLKAEVIRKAFRGAE 318 Query: 315 TRFEIEIGVERPVIAETSRRGWWQAGQQIGIRVSAEALVKLAPRA 359 + +++ + ++A G++IGIR+ AE +V +A Sbjct: 319 FLYTLKLPSGQQLLALVPSHHDHALGERIGIRLEAEHVVTFPKQA 363 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 129/215 (60%), Gaps = 11/215 (5%) Query: 9 SIRLQQCAKSFANG---TRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDMG 65 +I ++ +K F+ G +AL+ ++L I+ GE + L+G SGCGK+T LR++AG E G Sbjct: 13 AIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSG 72 Query: 66 GRVFFGDEDVTALPIEKRGV--GMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVE 123 +G +PI+ GMVFQ+Y LFP ++V ENI +G + R +P A+ E Sbjct: 73 SANMYG------MPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSA 126 Query: 124 SLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 +MV L ++ QLSGG KQRVA+AR LA + VLL+DEP ALDA RE ++ D Sbjct: 127 YYTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQD 186 Query: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERG 218 L ++ +T ++VTH EA+ L DR+VVM G Sbjct: 187 LLEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 385 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 29 LDLDIH-PGETLV-LLGPSGCGKTTTLRMIAGLE-----FPDMGGRVFFGDEDVTALPIE 81 LD+D+ PG + L GPSG GKTT LR + GLE + ++ G V+ DE LP Sbjct: 44 LDVDLTLPGRGVTALFGPSGSGKTTCLRAMTGLERFSGSYLEVNGEVWQDDERNIFLPTY 103 Query: 82 KRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAAERAERVESLLEMVHLQGLSHRRVDQ 141 KR +G VFQ +LF +++V N+ YG R++ AA +E + ++ + L R D+ Sbjct: 104 KRPLGYVFQEASLFAHLNVQRNLEYGR--RRVSAATHQVSLEHAVALLDIGHLLQRNPDK 161 Query: 142 LSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHD 201 LSGG++QRVA+ARALA PR+LL+DEPL ALD+K +E + L +L L I IYV+H Sbjct: 162 LSGGERQRVAIARALATSPRILLMDEPLAALDSKRKEEIMPYLERLHDELDIPVIYVSHS 221 Query: 202 QGEAMALGDRIVVMERGKISQIGTPQEI 229 E L D +V++E GK+ G ++ Sbjct: 222 ADEVARLADHLVLLESGKVIASGATSDL 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 837,954 Number of extensions: 36541 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 70 Length of query: 364 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 280 Effective length of database: 910,473 Effective search space: 254932440 Effective search space used: 254932440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)