BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0562.p (267 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport... 68 5e-13 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 55 3e-09 >gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 259 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 23/258 (8%) Query: 15 LLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWDMYQ--PTIWRSLIIALACL 72 +LV AFL VP+ + ++ ++ G TL W ++ + SLIIAL Sbjct: 16 VLVYAFLYVPLAIVVVYSFNDSRLNAEWVGFTLDWYRTLFANEEMLRAAGNSLIIALVSS 75 Query: 73 VVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAYGQWRDFRAS 132 V+ + G + L RY+ R+++ L++ P+A+P + ++L++ + + Sbjct: 76 AVSTLLGTMAGFALHRYK------IRLLQVLVLTPIAIPEILVGVSLLIFFVML-NLTLG 128 Query: 133 ILFILVGHVIFTLPFM---VRPVLAVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPNCAS 189 +L + + H+ F++ F+ VR L+ M S L EAA GA + F + +P Sbjct: 129 MLSVTLAHIAFSMGFVAIVVRSRLSGMDES----LTEAARDCGATPWQAFRRVTLPLIMP 184 Query: 190 GILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRL----EVGSAYTLIFFF 245 G++AGALM TLSI +F IT+ T TLP+ + Y+ +++ EV + TL+ Sbjct: 185 GVVAGALMAFTLSIDDFVITFFTAGANTSTLPLQI---YSMIKIAVTPEVNAVSTLLMAL 241 Query: 246 MIIPLLIGMQWVTQATRK 263 + ++I + A R Sbjct: 242 TLFLIVIASKLSPNAFRS 259 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 16/149 (10%) Query: 70 ACLVVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAY------ 123 + ++VT + G LA+++ RY RL I+ L+ +P A+P + L + Sbjct: 56 STIIVTFI-GFLLAWIITRYDFPGRRL---IDSLVDLPFALPTSVAGITLSALFIPTGWL 111 Query: 124 GQWRDF---RASILF--ILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRR 178 GQW + + S F I+V +LPF+VR V V++ + +LEEAA LGA + + Sbjct: 112 GQWFEIFGIKISYAFPGIVVAMTFTSLPFIVRSVQPVLEDME-KELEEAALMLGANKWQI 170 Query: 179 FFGIVIPNCASGILAGALMVVTLSIGEFN 207 F+ +++P ++ G+ S+GEF Sbjct: 171 FWRVILPTLIPALITGSSQAFIRSLGEFG 199 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.332 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 546,544 Number of extensions: 20208 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 5 Length of query: 267 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 185 Effective length of database: 917,867 Effective search space: 169805395 Effective search space used: 169805395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 129 (54.3 bits)