BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0561.p (294 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980049|ref|YP_001352502.1| sulfate transport system permea... 91 6e-20 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 86 3e-18 gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 79 2e-16 gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport... 66 2e-12 gi|152981300|ref|YP_001355347.1| molybdate transport system perm... 64 1e-11 >gi|152980049|ref|YP_001352502.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 287 Score = 91.3 bits (225), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 104 LQRHRFPGQSLLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLA 163 L R++FPG+ ++ AM+ P A P V G + L G IG +L + A++ Sbjct: 93 LVRYKFPGKKIIDAMVDLPFALPTAVAGIALTALYSPNGWIG---RYLEAIGIKVAFTPL 149 Query: 164 GLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSG 223 G+ + + +P V+ TV E ++ LEEAA SLGA WQ V+ P + PAL++ Sbjct: 150 GVIIALTFIGLPFVVRTVQPVLEDMEKELEEAAASLGASHWQTFTKVIFPTVFPALLTGF 209 Query: 224 AICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTGYANFATAASLSIVLGVITWAML 279 A+ FA + G +G+ +A N+ ++ P+ I + Y ++A A ++++V+ + ++ ML Sbjct: 210 ALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTKLEQY-DYAGATAIAVVMLLASFLML 268 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 15/211 (7%) Query: 72 NRHYFASLVSTLVLSAVVTAA----TLAISVFVGLFL----QRHRFPGQSLLLAMLTFPL 123 ++++FA + ++ S +T + I F+G L R+ FPG+ L+ +++ P Sbjct: 31 DQYWFAITDARVLQSYKITIQGAFYSTIIVTFIGFLLAWIITRYDFPGRRLIDSLVDLPF 90 Query: 124 AFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVA 183 A P V G I L+ G L W + +Y+ G+ + + S+P ++ +V Sbjct: 91 ALPTSVAG---ITLSALFIPTGWLGQWFEIFGIKISYAFPGIVVAMTFTSLPFIVRSVQP 147 Query: 184 AAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGAICFATSVGAFGTAFTLAAN 243 E ++ LEEAA LGA WQ+ V+LP L+PALI+ + F S+G FG +A N Sbjct: 148 VLEDMEKELEEAALMLGANKWQIFWRVILPTLIPALITGSSQAFIRSLGEFGAVIMIAGN 207 Query: 244 I----DVLPMTIYNEFTGYANFATAASLSIV 270 I +V + ++ Y A AA S+V Sbjct: 208 IPFETEVTSLMLFVRLQEYNYPAAAAIASVV 238 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 10/217 (4%) Query: 61 EGAMAYLSVLTNRHYFASLVSTLVLSAVVTAATLAISVFVGLFLQRHRFPGQSLLLAMLT 120 +G AY++ + +++ TL+ +A+ L V + + F G+S+LL ++ Sbjct: 62 KGWDAYIAAILEEDAVSAIKLTLLTAAIAVPLNLVFGVAASWCIAKFDFRGKSILLTLID 121 Query: 121 FPLAFPGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILT 180 P + V+ G + ++L G QG G WL ++ +++ G+ L ++ + P V Sbjct: 122 LPFSVSPVISGLIYVLLFGAQGWFG---GWLQEHNIKILFAVPGIVLATIFVTFPFVARE 178 Query: 181 VVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGAICFATSVGAFGTAFTL 240 ++ + EEAA LGA W+ HV LP + L+ +C A ++G FG + Sbjct: 179 LIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVV 238 Query: 241 AANI----DVLPMTI---YNEFTGYANFATAASLSIV 270 + +I + +P+ + YNE+ A FA A+ L+++ Sbjct: 239 SGHIRGQTNTIPLQVEILYNEYQFSAAFAVASLLAML 275 >gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 259 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%) Query: 66 YLSVLTNRHYFASLVSTLVLSAVVTAATLAISVFVGLFLQRHRFPGQSLLLAMLTFPLAF 125 Y ++ N + ++L+++ V +A + + G L R++ LL ++ P+A Sbjct: 51 YRTLFANEEMLRAAGNSLIIALVSSAVSTLLGTMAGFALHRYKI---RLLQVLVLTPIAI 107 Query: 126 PGVVVGFMVIMLAGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAA 185 P ++VG +S +F L + + L ++ FS+ V + V + Sbjct: 108 PEILVG---------------VSLLIFFVMLNLTLGMLSVTLAHIAFSMGFVAIVVRSRL 152 Query: 186 EKLDPSLEEAARSLGARPWQVLLHVVLPALLPALISSGAICFATSVGAFG-TAFTLAANI 244 +D SL EAAR GA PWQ V LP ++P +++ + F S+ F T FT AN Sbjct: 153 SGMDESLTEAARDCGATPWQAFRRVTLPLIMPGVVAGALMAFTLSIDDFVITFFTAGANT 212 Query: 245 DVLPMTIYN 253 LP+ IY+ Sbjct: 213 STLPLQIYS 221 >gi|152981300|ref|YP_001355347.1| molybdate transport system permease protein [Janthinobacterium sp. Marseille] Length = 224 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 7/216 (3%) Query: 78 SLVSTLVLSAVVTAATLAISVFVGLFLQRHRFPGQSLLLAMLTFPLAFPGVVVGFMVIML 137 ++V TL L+++ T L I + +L R R +S + A + P+ P V+GF +++ Sbjct: 9 AIVLTLKLASLTTIILLLIGTPLAWWLARTRSWLKSPVGAFVALPIVLPPTVIGFYLLVA 68 Query: 138 AGRQGLIGALSNWLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAAR 197 G G +G L+ + +L F+++ GL +G +++S+P V+ + A E + E A Sbjct: 69 LGPNGPVGQLTQAMGFGTLPFSFT--GLVVGSVFYSMPFVVQPIQNAFEAMGERPLEVAA 126 Query: 198 SLGARPWQVLLHVVLPALLPALISSGAICFATSVGAFGTAFTLAANI----DVLPMTIYN 253 +L A P V LP P +++ + FA +VG FG + NI ++ + IY+ Sbjct: 127 TLRASPLDTFFSVTLPLAKPGYLTAIVMGFAHTVGEFGVVLMIGGNIPNQTRMISVQIYD 186 Query: 254 EFTGYANFATAASLSIVLGVITWAMLALARSLTGSG 289 +A A L+ + V + A+L + +L +G Sbjct: 187 HVEAL-EYAQAHWLAAGMLVFSMAVLIILYTLNPTG 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 626,887 Number of extensions: 23554 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 10 Length of query: 294 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 211 Effective length of database: 914,170 Effective search space: 192889870 Effective search space used: 192889870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)