BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0557.p (882 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthin... 1557 0.0 gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthino... 74 5e-14 >gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 881 Score = 1557 bits (4031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 744/882 (84%), Positives = 802/882 (90%), Gaps = 1/882 (0%) Query: 1 MQDKYSPAEVEQSAQQHWNAIDAYKTVENARDKEGRDKKKFYACSMLPYPSGKLHMGHVR 60 MQDKYSPAEVE+SA HW AIDAYK VENA+DK G+DKKKFYACSMLPYPSGKLHMGHVR Sbjct: 1 MQDKYSPAEVEKSAHDHWQAIDAYKAVENAKDKNGKDKKKFYACSMLPYPSGKLHMGHVR 60 Query: 61 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMANGVPPAQWTYSNIEYMKSQMQS 120 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMAN VPPAQWTY+NI+YMK+QM S Sbjct: 61 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAENAAMANNVPPAQWTYANIDYMKTQMAS 120 Query: 121 MGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTVNWDPIDQTVLANEQVIDG 180 MGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTVNWDPIDQTVLANEQVIDG Sbjct: 121 MGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTVNWDPIDQTVLANEQVIDG 180 Query: 181 RGWRSGAVIEKREIPMYYAKITDYADELLEHVETKLPGWPERVRLMQANWIGKSTGVRFA 240 RGWRSGA+IEKREIPMYYA+ITDYA+ELL+HV+ KLPGWPERVR+MQ+NWIGKSTGVRFA Sbjct: 181 RGWRSGALIEKREIPMYYARITDYAEELLDHVDNKLPGWPERVRIMQSNWIGKSTGVRFA 240 Query: 241 FPHQIKGADGQLINDGKLFVFTTRADTIMGVTFCAVAPEHPLATLAAENNPALQAFIAEC 300 F H I +G+LINDGKL+VFTTRADTI GVTFCAVAPEH LAT AA++NP L FIAEC Sbjct: 241 FTHDI-AEEGKLINDGKLWVFTTRADTIKGVTFCAVAPEHALATFAAKSNPELTDFIAEC 299 Query: 301 KQGSVIEADMATMEKKGMPTGLYVTHPLTGDQVEVWIGNYVLITYGDGAVMGVPAHDERD 360 K GSVIEADMATMEKKGMPTGL+V HPLTG VEVW+GNYVLITYGDGAVMGVPAHDERD Sbjct: 300 KLGSVIEADMATMEKKGMPTGLFVKHPLTGQLVEVWVGNYVLITYGDGAVMGVPAHDERD 359 Query: 361 FAFARKYNLPIKQVIAVEGKTYSTEAWEEWYGDKESGKTIASGKYDGLGYQAAVDAVAAD 420 FAFA+KY LPI VI V GKT+S AW EWYGDKE+G+ I SGKYDGL YQ AVDA+AAD Sbjct: 360 FAFAQKYVLPIHPVIDVPGKTFSDVAWHEWYGDKENGRCINSGKYDGLNYQQAVDAIAAD 419 Query: 421 LAAQGLGEKKVTFRLRDWGISRQRYWGTPIPIIHCPDCGDVPVPEQDLPVVLPEDCVPDG 480 LA GLGEKK+T+RLRDWGISRQRYWGTPIPIIHC DCGDVPVPE+DLPVVLPEDCVPDG Sbjct: 420 LAELGLGEKKITYRLRDWGISRQRYWGTPIPIIHCKDCGDVPVPEKDLPVVLPEDCVPDG 479 Query: 481 SGNPLNKHEQFLKVDCPKCGKPARRETDTMDTFVDSSWYYMRYTSPGSNDAMVDARNDYW 540 SGNPLNKHE+FL VDCP+CGKPARRETDTMDTFVDSSWYYMRY SP S+DAMVD+RNDYW Sbjct: 480 SGNPLNKHEKFLHVDCPQCGKPARRETDTMDTFVDSSWYYMRYCSPNSSDAMVDSRNDYW 539 Query: 541 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYYREDAAG 600 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETY+REDA+G Sbjct: 540 MPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYFREDASG 599 Query: 601 KKTWYNPADVDLSFDDKGRPVSAVLKEDGQPVMIGGTEKMSKSKNNGIDPQAQIDQYGAD 660 KKTW+NPADV L DDKGRPVSAVL DG+ V IGGTEKMSKSKNNGIDPQAQIDQYGAD Sbjct: 600 KKTWFNPADVQLQLDDKGRPVSAVLSSDGKAVEIGGTEKMSKSKNNGIDPQAQIDQYGAD 659 Query: 661 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWAFGYNNAARITAAGAIDAAQLDDGLK 720 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWA+GYN AAR+ A A D A L + K Sbjct: 660 TARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWAYGYNQAARVANASAFDFATLPEAHK 719 Query: 721 TLRREVHKVLQQADNDFKRIQYNTVVSACMKMLNTLEAAKPAAGAAGDAVLAECFSIFLR 780 LRRE HK+LQQADND+KRIQYNTVVSA MKMLNTLEAAK A +AV++E SIFLR Sbjct: 720 ALRRETHKILQQADNDYKRIQYNTVVSASMKMLNTLEAAKLDDSPASNAVISEGLSIFLR 779 Query: 781 VLNPVAPHITHVLWQQLGYAGTHGDILDAAWPQVDAAALEQSEIKLVVQVNGKLRGEVTV 840 +LNPVAPHITH LWQ+LG+A HGDILDA WPQVD AALEQ+EI++++QVNGKLRG + V Sbjct: 780 ILNPVAPHITHALWQELGFAKDHGDILDAPWPQVDPAALEQAEIEMMIQVNGKLRGSIIV 839 Query: 841 PKEADKATIEAAALANEDVKKFLTGAPKKVIVVPGKLVNIVA 882 K+ADKA+IEAAALANE V+KF+ G PKK+IVVPGKLVNIVA Sbjct: 840 AKDADKASIEAAALANESVQKFIEGTPKKIIVVPGKLVNIVA 881 >gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 965 Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 26/203 (12%) Query: 1 MQDKYSPAEVEQSAQQHWNAIDAYKTVENARDKEGRDKKKFYACSMLPYPSGKLHMGHVR 60 + + PA++E + W Y +A DK F P +G LH+GH Sbjct: 3 LAKSFDPADIEAFWRTEWEKRGYYTATTDA------DKPAFSIQLPPPNVTGTLHLGHGF 56 Query: 61 NYTINDVMYRYLRMNGYNVLMPMGWDAFGMPA----ENAAMANGVPPA------------ 104 N TI D + RY RM G+N G D G+ E A + Sbjct: 57 NQTIMDGLTRYHRMRGFNTAWIPGTDHAGIATQIVVERQLDAQKITRHDLGREKFVEKVW 116 Query: 105 QWTYSNIEYMKSQMQSMGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTVNW 164 +W + + Q++ +G + DWSRE K +F++++E+G+IY+ VNW Sbjct: 117 EWKEKSGSTITGQIRRLGASPDWSREYFTMDEPRSKTVTEVFVRLVEQGLIYRGKRLVNW 176 Query: 165 DPIDQTVLANEQVI----DGRGW 183 DP+ T +++ +V+ DG+ W Sbjct: 177 DPVLGTAVSDLEVVSEEEDGQMW 199 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,124,448 Number of extensions: 91868 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 2 Length of query: 882 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 790 Effective length of database: 880,897 Effective search space: 695908630 Effective search space used: 695908630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)