BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0554.p
         (422 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980424|ref|YP_001354589.1| gamma-glutamyl phosphate reduct...   712   0.0  

>gi|152980424|ref|YP_001354589.1| gamma-glutamyl phosphate reductase
           [Janthinobacterium sp. Marseille]
          Length = 415

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/414 (83%), Positives = 378/414 (91%)

Query: 8   MNRIGQQARAASRAMARADTAAKNQALLLIAAAIRRDAELLRAANALDLDAARANGLAEA 67
           M  +GQ+AR ASRAMA+ADTAAKNQALL IAAAIRR+A+ LRAAN LDL+AARA GLA A
Sbjct: 1   MKEVGQRARKASRAMAKADTAAKNQALLFIAAAIRREADALRAANQLDLEAARAGGLAPA 60

Query: 68  MLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPLGVIGIIYEA 127
           +LDRLTLSDKAIATMAEGLEQI +LPDPIGEISNMKYRPTGIQVGQMRVPLGVIGIIYEA
Sbjct: 61  LLDRLTLSDKAIATMAEGLEQIVALPDPIGEISNMKYRPTGIQVGQMRVPLGVIGIIYEA 120

Query: 128 RPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEEAVQVVETTDR 187
           RPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLV EGLA AGLP +AVQ+VETTDR
Sbjct: 121 RPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVNEGLAAAGLPADAVQIVETTDR 180

Query: 188 AAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDRADTRKALDV 247
           AAVG LITM +YVDVIVPRGGKGLIERLM+EA VPMIKHLDGICHVYIDD+AD +KALD+
Sbjct: 181 AAVGELITMPQYVDVIVPRGGKGLIERLMREATVPMIKHLDGICHVYIDDKADLKKALDI 240

Query: 248 AFNAKCHRYGTCNTMETLLVSRNIAAAILPPLSELYRVKEVELRCDAEAAEILADYPFLK 307
            FNAKCHRYGTCNTMETLLV+R++AA +LP L++LY  KEVELR D EA  IL  YP L 
Sbjct: 241 CFNAKCHRYGTCNTMETLLVARSVAATVLPELAKLYATKEVELRGDDEARAILQGYPHLA 300

Query: 308 AATDEDWDTEYLAPILAVKVVADVEEAIEHINRHSSQHTDSIVTEDYTRAMRFLREVDSA 367
           +AT+EDW TEYLA IL+VK+V  ++EAI+HIN +SSQHTD+IVTEDYTRAMRFLREVDSA
Sbjct: 301 SATEEDWSTEYLAAILSVKIVGSLDEAIDHINTYSSQHTDAIVTEDYTRAMRFLREVDSA 360

Query: 368 SVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGQGQVR 421
           SVM+NASTRFADGFEYGLGAEIGISNDKLHARGPVGL+GLTSLKYVV G G+VR
Sbjct: 361 SVMINASTRFADGFEYGLGAEIGISNDKLHARGPVGLDGLTSLKYVVFGHGEVR 414


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 823,169
Number of extensions: 33775
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 336
Effective length of database: 903,079
Effective search space: 303434544
Effective search space used: 303434544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)