BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0553.p
         (141 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981640|ref|YP_001354590.1| hypothetical protein mma_2900 [...   208   1e-55

>gi|152981640|ref|YP_001354590.1| hypothetical protein mma_2900
           [Janthinobacterium sp. Marseille]
          Length = 139

 Score =  208 bits (530), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 120/141 (85%), Gaps = 2/141 (1%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLWIK+LHIVF+ SWFAGLFYLPRIFVNLA ETD  A  RLL MAR+LYRFT ++++ A+
Sbjct: 1   MLWIKSLHIVFVISWFAGLFYLPRIFVNLAMETDATATTRLLLMARKLYRFTTILAVPAV 60

Query: 61  ALGVWLLVITWQFWKGPGNGWLHAKLLLVVLVIGYQHACGSLLKKFEHGKNTRSHLWFRW 120
             GV LL   + F +GPGNGWLHAK++LV+LVIGYQHAC SLLKKFEHG N RSH WFRW
Sbjct: 61  LFGVGLLF--YGFGQGPGNGWLHAKVVLVILVIGYQHACNSLLKKFEHGVNKRSHTWFRW 118

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVP++L+LAIVILVVVKPF
Sbjct: 119 FNEVPIVLLLAIVILVVVKPF 139


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.334    0.146    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 292,139
Number of extensions: 9647
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 67
Effective length of database: 947,443
Effective search space: 63478681
Effective search space used: 63478681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 125 (52.8 bits)