BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0551.p
         (418 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981177|ref|YP_001354592.1| N6-adenine-specific DNA methyla...   638   0.0  

>gi|152981177|ref|YP_001354592.1| N6-adenine-specific DNA methylase
           [Janthinobacterium sp. Marseille]
          Length = 406

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/406 (74%), Positives = 344/406 (84%), Gaps = 8/406 (1%)

Query: 6   THYSYFCPCPRGLEVALAEELNEIAQHAGTAANLKVHNQVPGGVHCSGTLLAAYQMNLHS 65
           + +SYFCPCPRGLE+ALAEELNEIA    T   LKVH QVPGGVHCSGTL  AY++NLHS
Sbjct: 3   SSHSYFCPCPRGLEIALAEELNEIALLDKT---LKVHTQVPGGVHCSGTLQDAYRINLHS 59

Query: 66  RIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFKVSHTIRVDLTAVKSPLRSLEFTTLK 125
           RIASRVL+RM H SY  ENDIYDLTLAQAWEDWF+V HTIR+D+TA+KSPLRSLEFTTLK
Sbjct: 60  RIASRVLMRMAHASYTTENDIYDLTLAQAWEDWFEVDHTIRIDVTAIKSPLRSLEFTTLK 119

Query: 126 IKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAHNFTVYLDTSGEALFKRGWREETGDA 185
           IKDAICDRF D +  RPSV+T+ PDMRI GF+DA  FT+YLDTSGEALFKRGWR ETGDA
Sbjct: 120 IKDAICDRFRDIYNRRPSVDTKMPDMRIVGFLDARTFTLYLDTSGEALFKRGWRMETGDA 179

Query: 186 PLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAEAAQIIAGVPPGARRRFAFEKFSNFD 245
           PLRENLAAGLLRT+GWKPG+ LFDPMCGSGTILAEAAQ++AG+PPG  R FAFEKF+ F 
Sbjct: 180 PLRENLAAGLLRTSGWKPGMTLFDPMCGSGTILAEAAQMLAGIPPGLHRDFAFEKFAGFS 239

Query: 246 ADAWFGIKGDFKPNPIPTTPTLFGSDISGDMVELTRKNLLRAGVHFEVPLKQIEAQEIKP 305
              W  IK   KPNP+P  PT+FGSDISGDMV +TR NL +AG+ FEVPLKQIEAQE+K 
Sbjct: 240 KAEWAAIKASVKPNPLPAEPTIFGSDISGDMVAMTRNNLNKAGIRFEVPLKQIEAQEVKA 299

Query: 306 PLDAEGQPLVGIILSNPPYGERIGVRGDRALPTEELFTQFFSAFSSTLKQRFAGWRVFLF 365
           P +       G++L+NPPYGERIGVRGD  +  +++  +FFSAF +TLKQRFAGW+VFLF
Sbjct: 300 PSETP-----GVLLTNPPYGERIGVRGDSTVEADDMAKEFFSAFGTTLKQRFAGWKVFLF 354

Query: 366 SADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKP 411
           +ADLGLPKL+RLKE+RKTPFFNGALECRLFRFDMVAG+NRRE+A P
Sbjct: 355 TADLGLPKLLRLKEARKTPFFNGALECRLFRFDMVAGFNRREQAIP 400


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,020,674
Number of extensions: 43618
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 332
Effective length of database: 903,079
Effective search space: 299822228
Effective search space used: 299822228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)