BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0549.p
         (279 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981447|ref|YP_001353351.1| hypothetical protein mma_1661 [...   150   1e-37

>gi|152981447|ref|YP_001353351.1| hypothetical protein mma_1661
           [Janthinobacterium sp. Marseille]
          Length = 272

 Score =  150 bits (378), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 135/260 (51%), Gaps = 18/260 (6%)

Query: 5   SDSLHLPSLFVSHGS-PMLAVE-PG------RTGPLLAGIGAAL-PRPRGIVVMSPHWET 55
           +DS  +P+ F+ HG  P   ++ PG      R    L  +   +  +P+ ++V+S HW  
Sbjct: 2   ADSKRVPTFFIPHGGGPCFFMDWPGDPHMWDRMADFLRNMHQEVGSKPKAVLVISGHWME 61

Query: 56  FTPRVGSQAQPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGL 115
               V + AQP +I+D+ GFPP  YEL YPAPGAPA+A+ V + L    +P  TD   G 
Sbjct: 62  DEFTVMTTAQPPLIYDYYGFPPHTYELTYPAPGAPAVAQRVVELLTAASIPVKTDSQRGY 121

Query: 116 DHGAWVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAREGILLIGSGSFTHNL 175
           DHG ++P + +YP AD+PV+QLS++    PA H + G  L  L  EG+L++GSG   HN+
Sbjct: 122 DHGVFIPFKLIYPDADIPVLQLSMKKTLDPAEHLRAGAALQQLRDEGVLIVGSGMSFHNM 181

Query: 176 RELRRTDSAGSDAPHALEFLQWFLDRMQAGDLQ---ALFGYRTTAPHAVRTHPSDEHLLS 232
           R      +  S       F  W  D + A   Q   AL      AP A  T P  +HLL 
Sbjct: 182 RGFSPAFTEPSK-----RFDTWLSDSIAAPSAQERDALLTEWEKAPDAKLTQPHPDHLLP 236

Query: 233 LFFAMGAA-DDWTRLVHLDS 251
           L  A GAA DD  R +  D 
Sbjct: 237 LMVAAGAAGDDIGRKIFEDK 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 726,770
Number of extensions: 33721
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 197
Effective length of database: 917,867
Effective search space: 180819799
Effective search space used: 180819799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)