BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0548.p (299 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 228 3e-61 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 222 2e-59 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 215 2e-57 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 210 8e-56 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 210 9e-56 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 228 bits (582), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 179/292 (61%), Gaps = 2/292 (0%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 +++L ++ F+ V D GS AAD L +S+ VSR + ELE G+RL+ RTTR+LSLT Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 AGALYLERCKQIVAALEEADDLLAAGSTKPTGLLRINAPLTFGVLHLAPLWPMFLERYPE 120 AGA L RC+Q++ + +++A P GLLRI +FG HLA +++ YP Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 VELDITLSDRIIDIIDEGYDLAIRIARLSDSTLVHRKLTSTSLPICASPAYLEKHGTPRH 180 V +D+ + DR++++++E DLAIRI++ D L+ R+LT +CA+PAYL +HG P Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQ 180 Query: 181 PHELAQHQIISYSYNHGKDEWQFNGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQP 240 +L H +++SY +G W + PV+V V + N+ S + AAL G GI P Sbjct: 181 AEQLVLHNCLTHSY-YGS-VWLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAMLP 238 Query: 241 TFMIDQYLRSGQLVPLLTDFPAPDLGIYAVYPSRAHLPAKVRAMLDFLADAF 292 TF+ Y+RSGQL+PLL ++ + G++ VY SR H+PA +R MLDFLA F Sbjct: 239 TFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARF 290 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 177/300 (59%), Gaps = 2/300 (0%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 ++KL++IE F+ + SF AA AL ++ V R + LE RLG RL+ R+TRRL+LTE Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 AGALYLERCKQIVAALEEADDLLAAGSTKPTGLLRINAPLTFGVLHLAPLWPMFLERYPE 120 G++YLE C++++ LE A+ L+AG K TG L ++AP +FG H+AP FLE++P Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 VELDITLSDRIIDIIDEGYDLAIRIARLSDSTLVHRKLTSTSLPICASPAYLEKHGTPRH 180 +++ L+DR++D++ EGYD+ IRI D V KL + +C + Y +KHG P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKT 180 Query: 181 PHELAQHQIISYSYNHGKDE-WQFNGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQ 239 +LA H +S++ G+ W FN VSVR + N+G+ + G+GI + Sbjct: 181 LDDLANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAWR 240 Query: 240 PTFMIDQYLRSGQLVPLLTDFPAPDLGIYAVYPSRAHLPAKVRAMLDFLADAFAQ-VHWS 298 + I + L SG L +L D+ P+ I AVYP + ++PAKVR + L ++Q +WS Sbjct: 241 SVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKAMYSQPGYWS 300 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 215 bits (548), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 173/294 (58%), Gaps = 1/294 (0%) Query: 1 LNKLREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 +N L ++ F + GS A LG++ AV++ + LE RLG RL+ RTTR +S+T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 AGALYLERCKQIVAALEEADDLLAAGSTKPTGLLRINAPLTFGVLHLAPLWPMFLERYPE 120 G +YL +I+ +EE + ++ P GLLRINA FG H+AP F+E+YPE Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 VELDITLSDRIIDIIDEGYDLAIRIARLSDSTLVHRKLTSTSLPICASPAYLEKHGTPRH 180 +E+ + LSDR ++ID+ +D+ IRI + D+ ++ RK+ + +CA+PAY+++HGTP Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSV 180 Query: 181 PHELAQHQIISYSYNHGK-DEWQFNGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQ 239 P +L + Q I N W + + S++V + N+G++ + AL G GI + Sbjct: 181 PRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMR 240 Query: 240 PTFMIDQYLRSGQLVPLLTDFPAPDLGIYAVYPSRAHLPAKVRAMLDFLADAFA 293 + + YLRSG+LV +L D+ P IYAVYP R +L AKV A +DF++ FA Sbjct: 241 SQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFA 294 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 210 bits (535), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 175/286 (61%), Gaps = 1/286 (0%) Query: 6 EIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65 E+E F+ +A LG+ AA AL I+ A ++ + +LE+RLG RL+ RTTR +SLT G +Y Sbjct: 64 ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123 Query: 66 LERCKQIVAALEEADDLLAAGSTKPTGLLRINAPLTFGVLHLAPLWPMFLERYPEVELDI 125 L +I+A ++E +D +++G P GLLR+NA L FG +APL F+ RYP+VE+ Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183 Query: 126 TLSDRIIDIIDEGYDLAIRIARLSDSTLVHRKLTSTSLPICASPAYLEKHGTPRHPHELA 185 +SD+ ID+++ G+DLAIR L D+ L RKL S +CASP YLE+HGTP+ +L+ Sbjct: 184 EVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADLS 243 Query: 186 QHQIISYSYN-HGKDEWQFNGPEGPVSVRVNARMHVNNGDSCVQAALGGIGITRQPTFMI 244 +H+ I++ N W+F ++V + + N+GD + AL GI + + + Sbjct: 244 RHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRSEWDL 303 Query: 245 DQYLRSGQLVPLLTDFPAPDLGIYAVYPSRAHLPAKVRAMLDFLAD 290 +Y++SG+L +L D+ P ++ YP+R + + RA +DFL + Sbjct: 304 AKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIE 349 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 210 bits (534), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 174/300 (58%), Gaps = 11/300 (3%) Query: 4 LREIECFIAVADLGSFVKAADALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 L IE F A+ GSF AA+ G++ AAVSR++ LEARLG RL RTTR++ LT+ G Sbjct: 10 LGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGR 69 Query: 64 LYLERCKQIVAALEEADDLLAAGSTKPTGLLRINAPLTFGVLHLAPLWPMFLERYPEVEL 123 +Y E+C++ +A L +A+ ++ G KP GLLRI+ P +G L PL P F +RYP+V++ Sbjct: 70 VYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQV 129 Query: 124 DITLSDRIIDIIDEGYDLAIRIARLSDSTLVHRKLTSTSLPICASPAYLEKHGTPRHPHE 183 ++ +S+R ID +E YDLAIR +DS L+ RKL L + A+P+YL++ G P+ + Sbjct: 130 EVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLED 189 Query: 184 LAQHQIISYSY--NHGKDEWQFNGPEGPVSVRVNARMHVNNGDSCVQAALG-------GI 234 L +H+ I + + W F+ P G V + M N G SC + LG G Sbjct: 190 LQKHECIQFELPSTGRRIPWVFH-PNGKVQGKAVDIM-TNGGYSCAEDVLGIVTLARSGA 247 Query: 235 GITRQPTFMIDQYLRSGQLVPLLTDFPAPDLGIYAVYPSRAHLPAKVRAMLDFLADAFAQ 294 G+ + F+++ LR G+LV LL F A +YP HL ++VRA +DFL + Q Sbjct: 248 GLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEKLVQ 307 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 670,580 Number of extensions: 27526 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 33 Length of query: 299 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 216 Effective length of database: 914,170 Effective search space: 197460720 Effective search space used: 197460720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)