BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0545.p (400 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980791|ref|YP_001354200.1| ammonium transporter [Janthinob... 659 0.0 gi|152980667|ref|YP_001352279.1| ammonium transporter [Janthinob... 144 9e-36 gi|152981218|ref|YP_001351860.1| ammonium transporter [Janthinob... 114 8e-27 >gi|152980791|ref|YP_001354200.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 400 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/400 (79%), Positives = 360/400 (90%) Query: 1 VDDHKNGADALFILLGAIMILAMHAGFAFLELGTVRKKNQVNALVKILADFAVSTIVYFF 60 +D K+G DALFI+LGA+M+LAMHAGFAFLELGTVRKKNQVNALVKIL DFAVSTI YFF Sbjct: 1 MDALKHGTDALFIMLGAVMVLAMHAGFAFLELGTVRKKNQVNALVKILVDFAVSTIAYFF 60 Query: 61 IGYYVAYGVSFFAGAETLAQKSGFELVKFFFLLTFAAAIPAIISGGIAERSKFNPQLVAT 120 +GY +AYG SFF+ AE L Q++G+ELVKFFFLLTFAAAIPAIISGGIAER++F+PQL+AT Sbjct: 61 VGYSIAYGTSFFSSAEVLTQRNGYELVKFFFLLTFAAAIPAIISGGIAERARFHPQLLAT 120 Query: 121 AVLVGLVYPFFEGIAWNQHLGVQAWLAARFGAQFHDFAGSIVVHAVGGWIALPAILLLGA 180 A++VG+VYP FEGIAWNQH G+QAWL FGA FHDFAGSIVVHAVGGWIALPA+LLLGA Sbjct: 121 ALIVGVVYPLFEGIAWNQHFGIQAWLKESFGANFHDFAGSIVVHAVGGWIALPAVLLLGA 180 Query: 181 RRGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNVMSAQTLEKMNGLVAMNSLMAMA 240 RRGRY+KEG +AAHPPS+IPFLALGAWILTVGWFGFNVMSAQT+E+MNGLVA+NSLMAM Sbjct: 181 RRGRYTKEGTIAAHPPSSIPFLALGAWILTVGWFGFNVMSAQTMEQMNGLVAVNSLMAMV 240 Query: 241 GGTLVALLMGRNDPGFAYNGPLAGLVAVCAGSDLMHPLGALITGGIAGAIFVWMFTRTQN 300 GGTL A L G+NDPG+ +NGPLAGLVAVCAGS++MHPLGALITG IAG IFVW F TQN Sbjct: 241 GGTLAAFLAGKNDPGYVHNGPLAGLVAVCAGSNVMHPLGALITGAIAGFIFVWAFALTQN 300 Query: 301 KWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQALGGRGGVSFMAQLIGSLMGIAIAALGGW 360 KWKIDDVLGVWPLHGLCG WGGLAAGIFGLQA GG GGVSFM+QLIG+ +GI+IA GG+ Sbjct: 301 KWKIDDVLGVWPLHGLCGAWGGLAAGIFGLQAFGGMGGVSFMSQLIGTGLGISIALAGGF 360 Query: 361 IVYGLLKKAVGIRLDPEQEFEGADLAIHKISSTAERETSW 400 ++YG LK VGIRLDPEQEF GADL+IH +S+T ERET W Sbjct: 361 LIYGALKVTVGIRLDPEQEFNGADLSIHNVSATPERETYW 400 >gi|152980667|ref|YP_001352279.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 483 Score = 144 bits (363), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 133/415 (32%), Positives = 197/415 (47%), Gaps = 40/415 (9%) Query: 1 VDDHKNGA-DALFILLGAIMILAMH-AGFAFLELGTVRKKNQVNALVKILADFAVSTIVY 58 VD K A D ++L ++L M G A G VRKKN + + A + T+++ Sbjct: 77 VDASKISAGDTAWLLASTALVLFMTIPGLALFYAGMVRKKNVLATMAHSFAVTCLVTVIW 136 Query: 59 FFIGYYVAY--GVSFFAGAETL-------AQKSGF-----------ELVKFFFLLTFAAA 98 IGY +A+ G + G + + A+++G E V F +TFA Sbjct: 137 VVIGYSLAFTPGSPYIGGLDRVLLNGMEFAKEAGKVSVSEIAPTIPESVFIMFQMTFAII 196 Query: 99 IPAIISGGIAERSKFNPQLVATAVLVGLVYPFFEGIAWNQHLGVQAWLAARFGAQFHDFA 158 PA+I+G AER KF+ L+ + VY W WLA R DFA Sbjct: 197 TPALITGAFAERMKFSALLMFITLWSIFVYAPVAHWVWEPG----GWLATR---GVLDFA 249 Query: 159 GSIVVHAVGGWIALPAILLLGARRGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNV 218 G VVH G L A +++G R G + KE PP N+ +GA +L VGWFGFN Sbjct: 250 GGTVVHINAGVSGLVAAIIIGPRLG-FGKE----PMPPHNLVLTVIGASMLWVGWFGFNA 304 Query: 219 MSAQTLEKMNGLVAMNSLMAMAGGTLVALL---MGRNDPGFA--YNGPLAGLVAVCAGSD 273 SA + G+ + + +A A G L +L + R P +G ++GLVA+ S Sbjct: 305 GSAVAADGRAGMAMLATQIATAVGALAWMLIEWLRRGKPSVLGLVSGAVSGLVAITPASG 364 Query: 274 LMHPLGALITGGIAGAIFVWMFTRTQNKWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQAL 333 + GAL+ G AG W T ++K DD L V+ +H + G+ G L GIF ++++ Sbjct: 365 FVGVSGALVIGTAAGLACYWGATTLKSKLGYDDSLDVFGVHAIGGIVGALLTGIFAVESI 424 Query: 334 GGRGGVSFMAQLIGSLMGIAIAALGGWIVYGLLKKAVGIRLDPEQEFEGADLAIH 388 GG SF Q G ++ + +A+ I+ G++ VG+R+ PE E EG DL H Sbjct: 425 GGAQS-SFGNQAFGVVVTVVFSAVMTAIILGIVSALVGLRVTPEAELEGLDLEQH 478 >gi|152981218|ref|YP_001351860.1| ammonium transporter [Janthinobacterium sp. Marseille] Length = 467 Score = 114 bits (286), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 182/406 (44%), Gaps = 35/406 (8%) Query: 6 NGADALFILLGAIMILAMH-AGFAFLELGTVRKKNQVNALVKILADFAVSTIVYFFIGYY 64 N D ++L ++++ M G A G R KN ++ L+++ F+ T+++ GY Sbjct: 67 NTGDTAWMLTSTMLVILMTIPGLALFYGGLGRSKNMLSVLMQVFVIFSTITVLWCLYGYS 126 Query: 65 V----------AYGVSFFAGAETLAQKSGF-ELVKFFFLLTFAAAIPAIISGGIAERSKF 113 + +G F G + E V F TFAA A+I G AER KF Sbjct: 127 LVFADGGSFVGTFGKLFLNGVKPDTLSGSIPEYVFIAFQSTFAAITCALIVGAFAERMKF 186 Query: 114 NPQLVATAVLVGLVYPFFEGIAWNQHLGVQAWLAARFGAQFHDFAGSIVVHAVGGWIALP 173 L + + Y + W A F DFAG VVH G L Sbjct: 187 AAVLAFSILWFTFSYIPVAHMVW-------APTGLLFADGALDFAGGTVVHINAGVAGLV 239 Query: 174 AILLLGARRGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNVMSAQTLEKMNGLVAM 233 ++G R G + KE A PP ++ +GA +L VGWFGFN SA + GL + Sbjct: 240 GAYMVGKRIG-FGKE----AMPPHSLTLTMVGASLLWVGWFGFNAGSALGANPIAGLAFI 294 Query: 234 NSLMAMAGGTLV-----ALLMGRNDPGFAYNGPLAGLVAVCAGSDLMHPLGALITGGIAG 288 N+++A TL ++L G+ A +G +AGLV + + + P+G+++ G I G Sbjct: 295 NTILATGAATLAWITTESMLKGKASMLGAASGAVAGLVGITPAAGFVGPMGSIVLGLIVG 354 Query: 289 AIFVWMFTRTQNKWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQALGGRGGVSF------M 342 A+ VW + + DD V+ +HG+ G+ G + G+ + GG G F M Sbjct: 355 AVCVWGVSGLKRLLGADDAFDVFGVHGVGGIVGAILTGVLAAPSFGGTGAADFSIAHQVM 414 Query: 343 AQLIGSLMGIAIAALGGWIVYGLLKKAVGIRLDPEQEFEGADLAIH 388 Q L+ + A+ +I+Y L+ +G+R+ E E EG D+ H Sbjct: 415 VQFKAVLITVVWTAVVAFIIYKLVDLVIGLRVSDEAEREGLDITSH 460 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 911,382 Number of extensions: 36966 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 3 Length of query: 400 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 315 Effective length of database: 906,776 Effective search space: 285634440 Effective search space used: 285634440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)