BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0542.p
         (303 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium ...   144   6e-36

>gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score =  144 bits (364), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 153/291 (52%), Gaps = 11/291 (3%)

Query: 5   YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 64
           +I+ +RD   V  +C+ L V  S Y    A  +NP     R++ DA L   I   + A+ 
Sbjct: 16  FIESHRDEFSVISMCQALDVERSGY---YAWLKNP--LSDRAQEDARLLKLIRASFMASH 70

Query: 65  RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSDPKAACPLDRVNR 124
            +YGA +V++ L   G   ++  V RLMR+ GL+     +      S P    P + + R
Sbjct: 71  GIYGAPRVFQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIP-NLLQR 129

Query: 125 QFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQAL 184
           QF   RPN+ WV+D TY+ TWQGWLY+A V+D+F+R++VGW V  ++  + VLDA+ +A+
Sbjct: 130 QFTVTRPNEAWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAV 189

Query: 185 YARQPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKA 244
            +R+P      + HSD+G+QY    +        + PS+  R + +DNA+ E+     K 
Sbjct: 190 RSRRPRHT---LIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKK 246

Query: 245 ELIHRRAPWKTRESVELATLEWV-AWFNHHRLLESIGYIPPAEAEANYYSR 294
           E + ++  +  RE+  L   E++  ++N  R    +G + P   E  +  R
Sbjct: 247 ERV-KKHIYADRETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRR 296


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 715,370
Number of extensions: 28735
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 220
Effective length of database: 914,170
Effective search space: 201117400
Effective search space used: 201117400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)