BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0537.p (597 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [... 207 1e-54 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 205 5e-54 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 202 3e-53 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 199 4e-52 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 195 8e-51 >gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [Janthinobacterium sp. Marseille] Length = 558 Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 220/432 (50%), Gaps = 12/432 (2%) Query: 166 LEQLRNSGYTDHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAV-DICPREYLFDMVKA 224 L L+ D T LPNR+ L++ L + P +S + L V + + ++ A Sbjct: 121 LRHLKWIARHDLATQLPNRSALLDSLAAL-----PKVKSNSNLHVLVVVSLQNAMELKSA 175 Query: 225 LGWDYAEAFLVEVCRTLQRAL-GTTQVYRVATTTF-VYLDDGDAQQRQQRQASLQRHFAH 282 G+D E + + L QVYR+ + + + DAQ A L R Sbjct: 176 FGFDVIEEVIRQSAARYTNILQDKVQVYRIDPEQLGILVKNRDAQTINLLLAELVRGARQ 235 Query: 283 ALEIHGIPHQLDIAVG--VLPQVNELDGGDVVRALLTVIDVSREEGVSPRIFEPAHAENQ 340 + + IP D +G +V + + RA +I + E+ + + P + Sbjct: 236 PYQFNAIPIHADSRLGYATFSKVVQSPEFYLQRAESALIS-ADEDALDCVAYSPETSNFA 294 Query: 341 RYAFWVLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISL 400 + +L +L A G+LSL+YQPK+ ++ G VEAL+RW HP GNI P +FI Sbjct: 295 KENLSILGSLMSAIKE-GQLSLHYQPKICIRTGEVHSVEALMRWNHPERGNIPPAIFIPR 353 Query: 401 AEKTAQIRQITTWVVRQAVAQAAHWAQRGRATPVAINTSARDFEADDLQCLLAQLLMQHM 460 AE++ I IT + + QA+ Q W Q+G P+A+N S R+ L+ LL ++ Sbjct: 354 AEQSTLINLITEFALEQAMKQIVLWRQQGIHLPIAVNISPRNLLQPGFSDLVLSLLQRYE 413 Query: 461 VPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMK 520 V +E+E TE A+ ++ + + E + ++IDDFG G+S+L YL +P ++K Sbjct: 414 VSGQSLELEVTEGALMTDIARTIIELSRLAEAKITISIDDFGTGYSSLQYLHQLPISLIK 473 Query: 521 IDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAI 580 ID+SF+R L DD+ IV + + LAH++G +AEGVE + +LL LGCD AQGY I Sbjct: 474 IDQSFVRRLPDDKGAVHIVEAAVTLAHKMGMQTIAEGVEEQSAYKLLSDLGCDIAQGYMI 533 Query: 581 ARPMPAEELEEW 592 +RP+PA E E+W Sbjct: 534 SRPLPAAEFEKW 545 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 205 bits (522), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 147/234 (62%), Gaps = 1/234 (0%) Query: 358 GELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISLAEKTAQIRQITTWVVRQ 417 GE L+YQP++ L+ G +GVEALIRWQHP LG I P FI LAE+T I I WV+R+ Sbjct: 705 GEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLIVPIGAWVIRE 764 Query: 418 AVAQAAHWAQRGRAT-PVAINTSARDFEADDLQCLLAQLLMQHMVPPGLIEIEFTESAMA 476 A Q W + G + +++N SAR F DL +A L + +PP +EIE TES + Sbjct: 765 ACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQLPPQCLEIELTESLVM 824 Query: 477 SNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMKIDRSFIRGLVDDEADQ 536 ++ + ++ ++ LGV+++IDDFG G+S+LSYLK P DV+KIDRSF+ + D D Sbjct: 825 ADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDA 884 Query: 537 VIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAIARPMPAEELE 590 IV SII LAH L V+AEGVE E + LQ CD QGY +RP+ A+ +E Sbjct: 885 AIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPITADAME 938 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 217/426 (50%), Gaps = 18/426 (4%) Query: 176 DHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDMVKALGWDYAEAFLV 235 D +TGLPNRA L + L + S + + VD+ +++ D +G + L Sbjct: 479 DVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFVND---TMGHQAGDVLLK 535 Query: 236 EVCRTLQRALGTTQ-VYRVATTTFVYL----DDGDAQQRQQRQASLQRHFAHALEIHGIP 290 + LQ ++ + V R+ FV + DG + + L I G Sbjct: 536 IISDRLQASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSE 595 Query: 291 HQLDIAVGVLPQVNELDGGDVVRALLTVIDV----SREEGVSP-RIFEPAHAENQRYAFW 345 L ++G+ N DG D LL DV S+E G + + + PA + Sbjct: 596 FFLSCSMGIAVYPN--DGADPT-TLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERLR 652 Query: 346 VLSALPVAFNTPGELSLYYQPKVRLQDGACIGVEALIRWQHPILGNISPEVFISLAEKTA 405 + L A EL L+YQP+V L GA +G+EAL+RW HPILG + P FISLAE+T Sbjct: 653 IEGELRHAIEL-NELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETG 711 Query: 406 QIRQITTWVVRQAVAQAAHWAQRG-RATPVAINTSARDFEADDLQCLLAQLLMQHMVPPG 464 I I WV++ A QA W G +A+N SAR F L + L + + Sbjct: 712 LIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEAR 771 Query: 465 LIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYLKSIPADVMKIDRS 524 +EIE TES++ ++ E ++ ++ LGV++++DDFG G S+L+YLK P D +KIDRS Sbjct: 772 FLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRS 831 Query: 525 FIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLGCDYAQGYAIARPM 584 F+R + ++ D IV SII LAH L V+AEGVE + +L+ GC+ QGY +P+ Sbjct: 832 FVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPL 891 Query: 585 PAEELE 590 P++++E Sbjct: 892 PSDQIE 897 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 199 bits (506), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 136/440 (30%), Positives = 215/440 (48%), Gaps = 42/440 (9%) Query: 176 DHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDMVKALGWDYAEAFLV 235 D +T LPNR M L + + + A L +D+ + + D LG + L Sbjct: 468 DGLTALPNRHWFMSYLPKALENARANATMLAILFIDLDDFKNVND---TLGHSAGDQLLC 524 Query: 236 EVCRTLQRALG-TTQVYRVATTTFVYLDDGDAQQRQQRQASLQRHFAHALEIHGIPHQLD 294 V + L+ L + +V R+ F + +A ++ A H AHA+ + + Sbjct: 525 TVAKRLRSVLRPSDKVIRIGGDEFTVI--LEAIHSEEEAA----HIAHAIN-QALREPFE 577 Query: 295 IAVGVLPQVNELDG----------GDVVRALLTVIDVSREEGVSPRIFEPAHAENQRYAF 344 I+ Q N + G G V L+ D++ ++ ++ F Sbjct: 578 ISRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIA--------MYAAKTGSKGQFRF 629 Query: 345 W---VLSALPVAFNTPGELS---------LYYQPKVRLQDGACIGVEALIRWQHPILGNI 392 + + + + NT EL +YYQP+V+ Q G +G+EALIRWQHP G + Sbjct: 630 YDHTLYEDIKMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLV 689 Query: 393 SPEVFISLAEKTAQIRQITTWVVRQAVAQAAHWAQRG-RATPVAINTSARDFEADDLQCL 451 P FI LAE++ I I VV + AQ A W ++G A PV++N S F ++ Sbjct: 690 LPNDFIGLAEESGLINPIGELVVDKVCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKS 749 Query: 452 LAQLLMQHMVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYL 511 +A L +H +P L+EIE TESAM N + + AI +G+KV +DDFG G+S+LS L Sbjct: 750 IAASLAKHGIPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLL 809 Query: 512 KSIPADVMKIDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLG 571 + + D++KID++F L + ++ +I+ +A LG VVAEGVE + +LQ L Sbjct: 810 QRLDMDILKIDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLS 869 Query: 572 CDYAQGYAIARPMPAEELEE 591 CD QGY +A P+PA+ + + Sbjct: 870 CDEVQGYYVAWPLPADNIAD 889 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 195 bits (495), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 139/438 (31%), Positives = 207/438 (47%), Gaps = 28/438 (6%) Query: 167 EQLRNSGYTDHVTGLPNRARLMEVLRSRAQESGPVSRSCAALAVDICPREYLFDMVKALG 226 E+L D +T LPNR LM L E+ S A L +D+ + + D LG Sbjct: 476 EELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLDDFKNIND---TLG 532 Query: 227 WDYAEAFLVEVCRTLQRALG-TTQVYRVATTTFVYLDDGDAQQRQQRQAS--LQRHFAHA 283 ++ L V L+ L V R+ F L + Q + + + F Sbjct: 533 HSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDISLIANRIMQTFNQP 592 Query: 284 LEIHGIPHQLDIAVGVLPQVNELDGGDVVRALLTVIDVSREEGVSPRIFEPAHAENQRYA 343 EI L I+ + DG D LL D++ A +N+ Sbjct: 593 FEIQ--QKMLTISASMGISRYPFDGRDA-ETLLKNADIAMYSA-------KADGKNKVRV 642 Query: 344 FWVLSALPVAFNTPGELSL-----------YYQPKVRLQDGACIGVEALIRWQHPILGNI 392 + + GE L YYQP+V Q G +G+EAL+RW HP G I Sbjct: 643 YDKKLYEEIELRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHPERGLI 702 Query: 393 SPEVFISLAEKTAQIRQITTWVVRQAVAQAAHWA-QRGRATPVAINTSARDFEADDLQCL 451 +P+ FI LAE T I + V+ + Q A W Q+ PV++N SAR F+ ++ Sbjct: 703 APDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEGNVSEF 762 Query: 452 LAQLLMQHMVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVKVAIDDFGAGFSNLSYL 511 +A L ++ V P IEIE TESAM N E VR + +I LG+++ +DDFG G+S+LS L Sbjct: 763 IASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYSSLSLL 822 Query: 512 KSIPADVMKIDRSFIRGLVDDEADQVIVPSIIHLAHQLGFGVVAEGVECERTVRLLQHLG 571 DV+K+DR+F + + + ++ SI+ +A L VVAEGVE +R+LQ LG Sbjct: 823 YKFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRVLQQLG 882 Query: 572 CDYAQGYAIARPMPAEEL 589 CD QGY +++P+P+ ++ Sbjct: 883 CDEIQGYLVSKPIPSSDV 900 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,298,798 Number of extensions: 51071 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 16 Length of query: 597 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 508 Effective length of database: 891,988 Effective search space: 453129904 Effective search space used: 453129904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)