BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0536.p (522 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 491 e-140 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 348 6e-97 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 343 2e-95 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 342 5e-95 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 337 9e-94 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 491 bits (1264), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/522 (54%), Positives = 361/522 (69%), Gaps = 17/522 (3%) Query: 4 WAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREAL 63 +A M++G KLSLGF L+TL + A++ IN + I N+++ ++LE LY AREAL Sbjct: 2 FANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREAL 61 Query: 64 DQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADNPNFSAVRGGLLQM 123 QTG+AARNAY+F DA KEL I+DEQKAIYL L K+ P + NF V GLL M Sbjct: 62 GQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLLTM 121 Query: 124 ADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDIN------QLIAEIAGQSKGAGA 177 A+EL+ PRQ+R + MEA+ FLVN CSPLRR+IV DI Q I ++ Q A Sbjct: 122 AEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVKSQEANLAA 181 Query: 178 ASESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDLAV 237 A+ ++LL L++ + +I+R + R L A+ +AQ +A GDL Sbjct: 182 QQSITIIIAISAVALL------LSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTS 231 Query: 238 EVSTRADDRS-SLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQA 296 +++ ++ D + LL A++ M SL IV +VR GT ++ AS +IASGN+DLS+RTE QA Sbjct: 232 QINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQA 291 Query: 297 SSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSI 356 SSLEETAS+MEE+TS V+ NA+NA QA+ L+ SAS IAVKGGQ++ EVV TM+ IN S+ Sbjct: 292 SSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAK 351 Query: 357 KVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKE 416 K+ DII VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR LAQRSAAAAKEIK Sbjct: 352 KITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKA 411 Query: 417 LISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITH 476 LI SV +V+ GS LV AG TM E+V SV++VT ++A+I +S+EQSAGIEQVN AI Sbjct: 412 LIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQ 471 Query: 477 MDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAPTA 518 MD TQQN+ALVE+AAAAA +L QA L + VS FK+ +A Sbjct: 472 MDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKIDASA 513 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 348 bits (892), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 231/523 (44%), Positives = 325/523 (62%), Gaps = 30/523 (5%) Query: 7 MRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREALDQT 66 ++IG +LSL F S++++ + L +A I L +I + + K ++ L+Q Sbjct: 4 LKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQI 63 Query: 67 GIAARNAYVFLEDVDARKEL----KIVDEQKAIYLAELQK----------LEPLLADNPN 112 RNA + E + EL K D L EL+K + L AD Sbjct: 64 ARNMRNALLMTEKAAIQAELTQIGKATDSLNN-ALVELEKTVRSERGRQTIAGLQADRSK 122 Query: 113 FSAVRGGLLQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQS 172 F ++ +++A +G + L P + + I++LI Sbjct: 123 FLPLKDDFIKLAS----------AGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELM 172 Query: 173 KGAGAASESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAH 232 K +GA + + A LI + +++ L+A A + TR + R L + A+ +A+++A Sbjct: 173 KKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPL----SQAVVLARKVAD 228 Query: 233 GDLAVEVSTRADDRS-SLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSAR 291 GDL + + D + LL A++ M + L IV QVR GTD+I AS +IA+GN+DLS+R Sbjct: 229 GDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSR 288 Query: 292 TERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDI 351 TE+QASSLEETAS+MEE+TS V+ NAENA Q+++LA SAS +AV+GG ++ +VV TM +I Sbjct: 289 TEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEI 348 Query: 352 NQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAA 411 N S+ K+VDII VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVRTLAQRSA+AA Sbjct: 349 NDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAA 408 Query: 412 KEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVN 471 KEIKELI SV KV GS LV AG TM E+V SV++VT ++++IT +S+EQ+ GIEQ+N Sbjct: 409 KEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQIN 468 Query: 472 DAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKV 514 A+ MD+ TQQN+ALVE+AAAAA++L QA L+++V FK+ Sbjct: 469 QAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 343 bits (879), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 234/542 (43%), Positives = 323/542 (59%), Gaps = 38/542 (7%) Query: 1 MKGWAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAR 60 MK A M+I KL+L F + + + + ++ + + L +SI+ + ++ A Sbjct: 1 MKMIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKL---ISKDRYPKTILAN 57 Query: 61 EALDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLA------DNPNFS 114 + A N + D K ++V + +A + LE L A DN S Sbjct: 58 SVQIEVNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVS 117 Query: 115 AV----------RGGLLQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQL 164 A R LLQ+A Q G + +L P++ K ++ + Sbjct: 118 AAIVARDQYVPARDTLLQLA----------QDGKTAEAKTYLDQVFMPVQVKYFIALDAM 167 Query: 165 IAEIAGQSKGAGAASESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAM 224 AG A+ + + A +I++LA + LL++ V + +TR + R L A+ Sbjct: 168 FDYQGSLMNVAGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLN----TAV 223 Query: 225 AIAQQIAHGDLAVEVSTRADDR-SSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIAS 283 +A+++A GDL+ V + + L+ A++ M D+L IV QVR GT +I AS EIA Sbjct: 224 GVARRVAQGDLSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIAR 283 Query: 284 GNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGE 343 GN+DLS+RTE+QASSLEETASAMEE+TS VR NA+NA QA++LA SA+ +A +GG ++ E Sbjct: 284 GNMDLSSRTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHE 343 Query: 344 VVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTL 403 V+ATM IN SS K+ DI VID IAFQTNILALNAAVEAARAGE GRGFAVVASEVR L Sbjct: 344 VIATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 403 Query: 404 AQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQ 463 AQRSA AA EIK LI SV KV+ GS LV+ AG+T++E+V SV ++G++A I+ +S+EQ Sbjct: 404 AQRSATAAMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQ 463 Query: 464 SAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKV----APTAA 519 SAGIEQV AI +DE TQQN+ALVEQ+AAAAQ+L QA L +LVS FK+ T+A Sbjct: 464 SAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSA 523 Query: 520 VP 521 P Sbjct: 524 AP 525 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 342 bits (876), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 232/531 (43%), Positives = 339/531 (63%), Gaps = 40/531 (7%) Query: 4 WAEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERAN---DVQNEKLEPLYAA- 59 ++ M+IG +L LGF +L +++A+ A I ++++ S+I R+ + E++ +AA Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAV-SAITRSMLELPIAKERMVSDWAAI 62 Query: 60 -REALDQTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQKLEPLLADN-------- 110 + ++ +T A++A L A+ D ++++ + +QKLEPLL + Sbjct: 63 TKASIARTIGVAKSADPALAQFSAK--FAADDSKQSMEI--IQKLEPLLNTDQEKELYAK 118 Query: 111 -----PNFSAVRGGLLQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLI 165 +F A R G++ +L + +++ A + + + + E Sbjct: 119 ILDVRKSFLAGREGVM------KLKTEGKEAEAAKYFDTTFLPAADSFKNHFTE-----F 167 Query: 166 AEIAGQSKGAGAASESAAKDA-LHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAM 224 E+ + AG A S + A + LL+ +V + A+ +T G+ R L A+ Sbjct: 168 VELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPL----KTAV 223 Query: 225 AIAQQIAHGDLAVEVSTRADDRSS-LLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIAS 283 A+++A GDL ++ + D LL A++ M D L IVG+VR GT++I AS EIA+ Sbjct: 224 DAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAA 283 Query: 284 GNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGE 343 GN+DLS+RTE+QASSLEETAS+MEE+TS V+ NA+NA QA++LA SAS +A+KGG ++ + Sbjct: 284 GNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQ 343 Query: 344 VVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTL 403 VV TM IN+SS K+VDIISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+L Sbjct: 344 VVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSL 403 Query: 404 AQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQ 463 AQRSA+AAKEIK LI SV KV+ G+ LV AG TM+EIV S+R+VT ++ +IT +S+EQ Sbjct: 404 AQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQ 463 Query: 464 SAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKV 514 SAGIEQ+N AI MD TQQN++LVE+AAAAA+++ QA L ++V FK+ Sbjct: 464 SAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 337 bits (864), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 225/521 (43%), Positives = 334/521 (64%), Gaps = 18/521 (3%) Query: 7 MRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREALDQT 66 ++IG +L+L F S++ + + L +A ++ L ++I ++ + K + ++ L++T Sbjct: 4 LKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNET 63 Query: 67 GIAARNAYVFLEDVDARKELKIVDEQKAIYLAE-LQKLEPLLADNPNFSAV------RGG 119 RNA + + + EL + E+ ++ +AE L KL+ + + + RG Sbjct: 64 ARNMRNALLMTDAAQIKGELDTI-EKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGR 122 Query: 120 LLQMADEL-RLPRQYRQSGAMEAYRDFLVNRCSPLRRKIVEDINQLIAEIAGQSKGAGAA 178 + D+ L Q G + L P + + + +++L+ + AG Sbjct: 123 FTPVKDKFVALVAQ----GMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGED 178 Query: 179 SESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLRQLGGEPAYAMAIAQQIAHGDL-AV 237 + + +A L+ +L+V+ +++ + F+ TR + R L + A+ +A+++A GDL Sbjct: 179 AHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPL----SQAVGLARKVADGDLTGT 234 Query: 238 EVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQAS 297 V T D+ LL A++ M + L IV QVR GTD+I AS++IA+GN+DLS+RTE QAS Sbjct: 235 IVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQAS 294 Query: 298 SLEETASAMEEITSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIK 357 SLEETAS+MEE+TS V+ NA+NA Q+++LA +AS +AV+GG ++ +VV TM IN S+ K Sbjct: 295 SLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANK 354 Query: 358 VVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKEL 417 +VDII VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR LAQRSA+AAKEIK L Sbjct: 355 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTL 414 Query: 418 ISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHM 477 I SV KV GS LV AG TM E+V SVR+VT ++ +IT +S+EQ+ GIEQ+N A+ M Sbjct: 415 IDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQM 474 Query: 478 DEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVAPTA 518 D+ TQQN+ALVE+AAAAA++L QA +L+++VS FK+ A Sbjct: 475 DQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANA 515 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 749,807 Number of extensions: 23959 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 21 Length of query: 522 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 434 Effective length of database: 895,685 Effective search space: 388727290 Effective search space used: 388727290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)