BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0535.p
         (386 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogen...    74   2e-14
gi|152980956|ref|YP_001352862.1| bifunctional glutathione-depend...    70   3e-13

>gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol
           dehydrogenases, class III [Janthinobacterium sp.
           Marseille]
          Length = 368

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 55/379 (14%)

Query: 24  EADDIILKVSATAICGSDLHLYRGKIPATQAGDILGHEFMGVVVEAGPAVKRLKKGDRVV 83
           +A ++++++ AT IC +D +   G  P      ILGHE  GVVV+ GP V  LKK D V+
Sbjct: 26  KAGEVLVEIKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVVDVGPGVTTLKKDDHVI 85

Query: 84  VPFVIACGQCFFCDQHLYAACETTNPDRG-AIINGKGIRSGAAMFGYSHLYGGMPGGQAQ 142
             +   C QC FC       C+     +G  ++     R         H  G      + 
Sbjct: 86  PLYTPECRQCKFCLSRKTNLCQAIRSTQGRGLMPDATSRFSLDSKPLFHYMG--TSTFSN 143

Query: 143 YVRVPKADVGPIRIDSALADEQVLFLSDILPTGYQAVK-NAGVGEGSSVAIYGAGPVGQM 201
           Y+ VP+  +  IR D+    ++  ++   + TG  AV  +A V  G++V ++G G +G  
Sbjct: 144 YIVVPEIALAKIREDAPF--DKACYIGCGVTTGVGAVVFSAKVEAGANVVVFGLGGIGLN 201

Query: 202 AAACARMLGAEKIFMVDHHDYRLRFAVEQYDVLPVNFDQVDP-AEYIIANTAGRGVDAVI 260
               A+M+GA+KI  VD +  R+  A +      VN  +V+   ++I+  T G G D   
Sbjct: 202 VIQAAKMVGADKIIGVDINPGRIEMARKFGMTHFVNPKEVENVVDHIVQLTDG-GADYSF 260

Query: 261 DAVGFEAKGSALETAMTNLKLEGSSGQALRHCIASVRRGGTLSVPGVYAGFIHGFLFG-- 318
           + +G            T ++      QAL  C               + G+   F+ G  
Sbjct: 261 ECIG----------NTTTMR------QALECC---------------HKGWGQSFIIGVA 289

Query: 319 ----DIFEKGLTVKTGQTHV---------QHYMPELLASIEDGWLRPEAIITHRLPLEEA 365
               +I  +   + TG+            +  +P+++    +G L  + +ITH LPLE  
Sbjct: 290 AAGQEISTRPFQLVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERI 349

Query: 366 ARGYRIFNEKQEECRKVVL 384
             G+ +  +  E  R VVL
Sbjct: 350 NEGFDLM-KSGESIRSVVL 367


>gi|152980956|ref|YP_001352862.1| bifunctional glutathione-dependent
           formaldehyde dehydrogenase /alcohol dehydrogenase class
           III oxidoreductase protein [Janthinobacterium sp.
           Marseille]
          Length = 368

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 156/367 (42%), Gaps = 37/367 (10%)

Query: 27  DIILKVSATAICGSDLHLYRGKIPATQAGDILGHEFMGVVVEAGPAVKRLKKGDRVVVPF 86
           ++++++ AT IC +D +   G  P      ILGHE  GVVVE GP VK LKK D V+  +
Sbjct: 29  EVLVEIKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVVEVGPGVKSLKKDDHVIPLY 88

Query: 87  VIACGQCFFCDQHLYAACET--TNPDRGAIINGKGIRS--GAAMFGYSHLYGGMPGGQAQ 142
              C +C FC       C+   +   RG + +     S  G  +F Y           + 
Sbjct: 89  TPECRECKFCLSRKTNLCQKIRSTQGRGLMPDATSRFSIDGKPLFHYMG-----TSTFSN 143

Query: 143 YVRVPKADVGPIRIDSALADEQVLFLSDILPTGYQAVK-NAGVGEGSSVAIYGAGPVGQM 201
           Y+ VP+  +  IR D+    ++V ++   + TG  AV   A V  G++V ++G G +G  
Sbjct: 144 YIVVPEIALAKIREDAPF--DKVCYIGCGVTTGVGAVLFTAKVEAGANVVVFGLGGIGLN 201

Query: 202 AAACARMLGAEKIFMVDHHDYRLRFAVEQYDVLPVNFDQVDPAEYIIANTAGRGVDAVID 261
               A+M+GA+KI  VD +  R   A +      +N  +V+     I      G D   +
Sbjct: 202 VIQAAKMVGADKIIGVDLNPAREAMARKFGMTHFINPSKVENVVDAIVQLTDGGADYSFE 261

Query: 262 AVG-FEAKGSALETAMTNLKLEGSSGQALRHCIASVRRGGTLSVPG---VYAGFIHGFLF 317
            +G       ALE            GQ++   I     G  +S      V      G  F
Sbjct: 262 CIGNVHTMRQALECCHKGW------GQSI--VIGVAEAGAEISTRPFQLVTGREWKGSAF 313

Query: 318 GDIFEKGLTVKTGQTHVQHYMPELLASIEDGWLRPEAIITHRLPLEEAARGYRIFNEKQE 377
           G           G+T V    P+++    +G L  + +ITH LPLE    G+ +  +  E
Sbjct: 314 GG--------ARGRTDV----PKIVDWYMEGKLNIDDLITHTLPLERINEGFDLM-KSGE 360

Query: 378 ECRKVVL 384
             R VV+
Sbjct: 361 SIRSVVI 367


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 964,112
Number of extensions: 42894
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 3
Length of query: 386
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 301
Effective length of database: 906,776
Effective search space: 272939576
Effective search space used: 272939576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)