BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0529.p (653 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 259 5e-70 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 249 3e-67 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 245 8e-66 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 242 6e-65 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 234 9e-63 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 259 bits (661), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 151/415 (36%), Positives = 229/415 (55%), Gaps = 5/415 (1%) Query: 221 ANLDSLTQIPNRRKFFAQLDQICSRATANGQRFAVAILDLDGFKAVNDLYGHTHGDQLLV 280 A D+LT +PNR + ++ Q + G+ A+A LDLD FK +ND GH GD+LL Sbjct: 275 ATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLK 334 Query: 281 EVGQRLSALCGEEYLHLARLGGDEFAIIIDAGQSDDVLQQFGARICDALRRPFVLYKATV 340 QRL++ C E +AR GGDEF +++ +++ + R+ + +P+ Sbjct: 335 ITAQRLTS-CLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKANDLEF 393 Query: 341 QIAASVGVATFPDMAVDASSLYEHADYALYQGKRERRGTVTLFSAQDKAQIQRNANVEQA 400 QI S+G+ PD DA +L ++AD A+Y+ K R FSA+ + + + Sbjct: 394 QITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLELLNR 453 Query: 401 LRRADFERELSVVFQPIVRLDDCQPVAFEALARWHSATKGVVAPMEFIPAAERMGIINQL 460 LR+A + + +QP V L Q + EAL RW+SA G+V+P FIP AE G+I L Sbjct: 454 LRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIPL 513 Query: 461 SVTLLKKALQAAATWP----PDMRLSFNLSANDINTSEGMSEIVKVITGSGFCASRLDLE 516 +L+ A + W P + +S NLS + + + + +++T +G A L+LE Sbjct: 514 GEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLELE 573 Query: 517 ITETAVLQDLGKSRQLVTSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADI 576 ITE+ + D+ KS L+T LR LG I+LDDFGTGY+SLS+L P+ +KID+SFV DI Sbjct: 574 ITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDI 633 Query: 577 EHDAVSHKIIKSLLALSHDMQLACVVEGVETPQHLQSLRELGAVYGQGYLFSVPL 631 D S I+K++++L ++ L + EG+ET Q L G GQGYL S P+ Sbjct: 634 ATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPV 688 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 249 bits (636), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 249/467 (53%), Gaps = 14/467 (2%) Query: 179 AMNVVLVTLGMLAI-VNSHYNDFRRLIDAQ----VKTTLLGNENL-RLANLDSLTQIPNR 232 A+ V++ TL +LAI + + D R +D+Q V++ L N+ L + A D+LT++PNR Sbjct: 217 AIVVIVTTLAVLAIALLTSVLDAR--LDSQTGKLVRSLALANQELTKQALQDNLTKLPNR 274 Query: 233 RKFFAQLDQICSRATANGQRFAVAILDLDGFKAVNDLYGHTHGDQLLVEVGQRLSALCGE 292 +LDQ+ +A RFA+ +DLDGFKA+ND GH GD LL++V +R+ Sbjct: 275 TLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGHHIGDLLLIDVAKRIRDNIRA 334 Query: 293 EYLHLARLGGDEFAIIIDAGQSDDVLQQFGARICDALRRPFVLYKATVQIAASVGVATFP 352 + ARLGGDEF ++I+ + +D ++C L +PF + + + I+AS+G+A +P Sbjct: 335 QDT-AARLGGDEFVMLIEVNEPEDA-ASVADKLCTTLNQPFDIAQYNLGISASIGIAVYP 392 Query: 353 DMAVDASSLYEHADYALYQGKRERRGTVTLFSAQDKAQIQRNANVEQALRRADFERELSV 412 + L HAD A+Y K R F A V Q LR A +E + Sbjct: 393 EDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINAHNQLQVIQDLRTALERKEFRL 452 Query: 413 VFQPIVRLDDCQPVAFEALARWHSATKGVVAPMEFIPAAERMGIINQLSVTLLKKALQAA 472 +QP D V EAL RW +G+VAP +FI AE+ G+I + +L +A + Sbjct: 453 HYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAEKTGLIVPIGEWVLDEACRQM 512 Query: 473 ATWPPD----MRLSFNLSANDINTSEGMSEIVKVITGSGFCASRLDLEITETAVLQDLGK 528 W + +++ NLS+ + + + + + + A+ L LE+TE+ + ++ Sbjct: 513 RKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNNLPATCLMLEVTESTAMHNVEA 572 Query: 529 SRQLVTSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADIEHDAVSHKIIKS 588 S ++ L LG I++DDFGTGY+SL +L LP T +KID+ F+ D+ H + I+ + Sbjct: 573 SLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELKIDRGFIRDLAHGSDDASIVSA 632 Query: 589 LLALSHDMQLACVVEGVETPQHLQSLRELGAVYGQGYLFSVPLAADQ 635 ++AL + L V EGVET + + L LG QGY P+A++Q Sbjct: 633 IVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFMGHPMASEQ 679 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 245 bits (625), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 242/453 (53%), Gaps = 20/453 (4%) Query: 207 QVKTTLLGNENLRLANLDSLTQIPNRRKFFAQLDQICSRATANGQRFAVAILDLDGFKAV 266 Q +TTL RLA+ D LT +PNR +L+ + + NG V ++DLD FK V Sbjct: 467 QYETTLH-----RLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFV 521 Query: 267 NDLYGHTHGDQLLVEVGQRLSALCGEEYLHLARLGGDEFAIIID------AGQSDDVLQQ 320 ND GH GD LL + RL A E +ARLGGDEF +++ +G S DV+Q Sbjct: 522 NDTMGHQAGDVLLKIISDRLQASVRESDT-VARLGGDEFVLVLPECGDGPSGYSSDVIQ- 579 Query: 321 FGARICDALRRPFVLYKATVQIAASVGVATFPDMAVDASSLYEHADYALYQGKRERRGTV 380 RI +A+ +P + + ++ S+G+A +P+ D ++L HAD A+Y+ K R Sbjct: 580 ---RIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNF 636 Query: 381 TLFSAQDKAQIQRNANVEQALRRADFERELSVVFQPIVRLDDCQPVAFEALARWHSATKG 440 ++ Q +E LR A EL + +QP V L V EAL RW+ G Sbjct: 637 QFYTPAMNDQALERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILG 696 Query: 441 VVAPMEFIPAAERMGIINQLSVTLLKKALQAAATWP----PDMRLSFNLSANDINTSEGM 496 +V P FI AE G+I + +L+ A + A W +R++ NLSA + + Sbjct: 697 MVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLL 756 Query: 497 SEIVKVITGSGFCASRLDLEITETAVLQDLGKSRQLVTSLRQLGCGITLDDFGTGYASLS 556 I + +G A L++E+TE++V+ D+ ++ + L+ LG +++DDFGTG++SL+ Sbjct: 757 ESIKDTLQETGLEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLA 816 Query: 557 HLHALPLTRIKIDKSFVADIEHDAVSHKIIKSLLALSHDMQLACVVEGVETPQHLQSLRE 616 +L P+ +KID+SFV DI + I+ S+++L+H+++L + EGVET + LR Sbjct: 817 YLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRA 876 Query: 617 LGAVYGQGYLFSVPLAADQVQSWLEHQTQCGCM 649 G QGY F PL +DQ+++ L +++ + Sbjct: 877 QGCNEIQGYYFCKPLPSDQIETLLLNESSAALV 909 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 242 bits (617), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 235/422 (55%), Gaps = 11/422 (2%) Query: 224 DSLTQIPNRRKFFAQLDQICSRATANGQRFAVAILDLDGFKAVNDLYGHTHGDQLLVEVG 283 D LT +PNRR L+ + + DLD FK+VND +GH GDQ L+E+ Sbjct: 446 DMLTDLPNRRFLVNTLNTAMETSRLRQSSLTMLFCDLDFFKSVNDTHGHDFGDQCLIEIS 505 Query: 284 QRL-SALCGEEYLHLARLGGDEFAIIIDAGQSDDVLQQFGARICDALRRPFVLYKATVQI 342 +R+ +AL +++ AR GG+EF I+ ++ ++ ++ I A+ + V+I Sbjct: 506 KRIVTALPTADFV--ARFGGNEFVILTNSSLAEATIK--ANTIMAAVSERLIFDNVVVKI 561 Query: 343 AASVGVATFPDMAVDASSLYEHADYALYQGKRERRGTVTLFSAQDKAQIQRNANVEQALR 402 S+G+A + L AD A+YQ K R ++ A +++ ++A ++ ALR Sbjct: 562 QTSIGIAQLNAGHQSPADLIRDADAAMYQAKERGRNRTEIYDAALQSKTTKHARMDVALR 621 Query: 403 RADFERELSVVFQPIVRLDDCQPVAFEALARWHSATKGVVAPMEFIPAAERMGIINQLSV 462 A ELSV +QP V L D FE L RW+S G+++P EFIP AE G++ + + Sbjct: 622 FALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVPIGM 681 Query: 463 TLLKKALQAAATWP---PDM---RLSFNLSANDINTSEGMSEIVKVITGSGFCASRLDLE 516 +++A + A W P+M ++ N+S + + S++ ++ SG ++LE Sbjct: 682 WAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMVELE 741 Query: 517 ITETAVLQDLGKSRQLVTSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADI 576 +TET+ + + ++ + ++ L++LG + LDDFGTGY+SL++L LP+ +KIDK+FV I Sbjct: 742 LTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFVRGI 801 Query: 577 EHDAVSHKIIKSLLALSHDMQLACVVEGVETPQHLQSLRELGAVYGQGYLFSVPLAADQV 636 + +II+ ++AL+ + L EGVET + +Q L+++G GQG+LFS PL A + Sbjct: 802 GSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPLTAQEA 861 Query: 637 QS 638 ++ Sbjct: 862 EA 863 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 234 bits (598), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 141/437 (32%), Positives = 227/437 (51%), Gaps = 9/437 (2%) Query: 216 ENLRLANLDSLTQIPNRRKFFAQLDQICSRATANGQRFAVAILDLDGFKAVNDLYGHTHG 275 E RLA D LT +PNR F + L + A AN A+ +DLD FK VND GH+ G Sbjct: 460 EMSRLATEDGLTALPNRHWFMSYLPKALENARANATMLAILFIDLDDFKNVNDTLGHSAG 519 Query: 276 DQLLVEVGQRLSALCGEEYLHLARLGGDEFAIIIDAGQSDDVLQQFGARICDALRRPFVL 335 DQLL V +RL ++ + R+GGDEF +I++A S++ I ALR PF + Sbjct: 520 DQLLCTVAKRLRSVL-RPSDKVIRIGGDEFTVILEAIHSEEEAAHIAHAINQALREPFEI 578 Query: 336 YKATV----QIAASVGVATFPDMAVDASSLYEHADYALYQGKRERRGTVTLFSAQDKAQI 391 + T +I S+G++ FP D +L ++AD A+Y K +G + I Sbjct: 579 SRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAKTGSKGQFRFYDHTLYEDI 638 Query: 392 QRNANVEQALRRADFERELSVVFQPIVRLDDCQPVAFEALARWHSATKGVVAPMEFIPAA 451 + N EQ L++A E + + +QP V+ + + EAL RW T+G+V P +FI A Sbjct: 639 KMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLVLPNDFIGLA 698 Query: 452 ERMGIINQLSVTLLKKALQAAATWPPD----MRLSFNLSANDINTSEGMSEIVKVITGSG 507 E G+IN + ++ K A+W + +S N+S + N + I + G Sbjct: 699 EESGLINPIGELVVDKVCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKSIAASLAKHG 758 Query: 508 FCASRLDLEITETAVLQDLGKSRQLVTSLRQLGCGITLDDFGTGYASLSHLHALPLTRIK 567 AS L++E+TE+A+++++G +T++ +G + +DDFGTGY+SLS L L + +K Sbjct: 759 IPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLLQRLDMDILK 818 Query: 568 IDKSFVADIEHDAVSHKIIKSLLALSHDMQLACVVEGVETPQHLQSLRELGAVYGQGYLF 627 ID++F + + ++++++ + + V EGVET + L L+ L QGY Sbjct: 819 IDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLSCDEVQGYYV 878 Query: 628 SVPLAADQVQSWLEHQT 644 + PL AD + + Q Sbjct: 879 AWPLPADNIADIIRKQN 895 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,444,224 Number of extensions: 58152 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 33 Length of query: 653 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 564 Effective length of database: 891,988 Effective search space: 503081232 Effective search space used: 503081232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)