BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0528.p (830 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 113 5e-26 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 81 2e-16 gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein... 81 3e-16 gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 74 3e-14 gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 70 4e-13 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 32/279 (11%) Query: 418 EARLRQINESLEAEVSARTRELMATEEALRHSQ-------KIEAIGQLTGGLAHDFNNLL 470 A L+ L+ +V RT EL T + L +Q K+ AIG++T G+AH+ NN + Sbjct: 408 NAELKSWGNELDRKVVERTAELEQTNKLLVQAQQQLVLAEKLAAIGEITAGVAHEINNPV 467 Query: 471 GGISGSLDLMRVRL------VQGRAEELLRYIDLAARSTQRAAALTQRLLAFARRQTLAP 524 + G+LD++R L VQG + L + R + +LL FA A Sbjct: 468 AVLQGNLDVLRDTLGAAAKPVQGE-------LQLMDQQIYRINTIVTKLLQFASPGEFAG 520 Query: 525 RPTNV--NTLIGGMEELIRRTIGPAITLEVISAVGLWPTFVDGPQLESALLNLCINARDA 582 V + ++ L+R + + V P ++ +L+ L+NL NA A Sbjct: 521 YVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEATLPVSINRGELQQVLINLFTNAIHA 580 Query: 583 MPDGGRLTIETTNKWLDDKWAQERDLPVGQYVCIAVTDNGTGMTPEVMARAFDPFFTTKP 642 M DGG LTI T++ W QE D G V I+V D G+G+ E +A FD FFTTK Sbjct: 581 MKDGGSLTISTSD-W------QEADGKRG--VAISVADTGSGIRKEDIAHIFDAFFTTKR 631 Query: 643 IGEGTGLGLSMVYGFARQSGGQVRLYSELGQGSTVSLYL 681 G GTGLGLS+ Y + GG + + SE G G+ ++ L Sbjct: 632 QG-GTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 26/268 (9%) Query: 435 RTRELMATEEALR------HSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLMRVRLVQ-G 487 R + L A EEA R H ++ ++G+LT + H+ N LG I + D + L Q Sbjct: 334 RKKRLRADEEANRQRTALAHVARLGSVGELTASIVHEINQPLGAILANADAATMMLNQQS 393 Query: 488 RAEELLRYIDLAARSTQ-RAAALTQRLLAFARRQTLAPRPTNVNTLIGGMEELIRRTIGP 546 + LR I R RA+ + Q+L +++L +P ++N +I L+ Sbjct: 394 HPDHELRAILADIRDDNLRASLIIQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNL--- 450 Query: 547 AITLEVISAVGLWPTFV----DGPQLESALLNLCINARDAMPDGGRLTIETTNKWLDDKW 602 AI V+ A+ L P D L+ L+NL NA +AM + + L K Sbjct: 451 AIKHHVMMAIELAPDLPMIMGDSTHLQQVLINLASNAMEAME-----AVPPAQRTLSIKT 505 Query: 603 AQERDLPVGQYVCIAVTDNGTGMTPEVMARAFDPFFTTKPIGEGTGLGLSMVYGFARQSG 662 Q ++ + V D G G+ ++ F+ F+TTKP EG G+GL++V Sbjct: 506 EQCN----ASHIRLIVADKGPGIPTNILPNIFESFYTTKP--EGMGMGLAIVQTIVDAHC 559 Query: 663 GQVRLYSELGQGSTVSLYLPRHQHAAQA 690 G + +++ G+ + P ++ +A Sbjct: 560 GLIETFNDPAGGAAFVITFPIAKNGMRA 587 >gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein [Janthinobacterium sp. Marseille] Length = 1667 Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 173/357 (48%), Gaps = 52/357 (14%) Query: 360 SFMDVPLIDEGELVGIVHVSSNVP-RTWTDNELAIVREVSQQTRAAFER--IRN--QQAL 414 S + +PL +G+L+G++++ +N+ +T +++ +S Q + E + N +Q + Sbjct: 1311 SILCLPLQKQGQLIGVLYMENNLAVDAFTPEHTELLQILSTQIAISLENAGLYNDLEQKI 1370 Query: 415 AASEARLRQINESLEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLG-GI 473 A L Q N L +++ R T++ L S K+ ++GQL G+AH+ N LG G+ Sbjct: 1371 EARTQALIQKNTELHDTLNSLRR----TQKQLVESAKLASLGQLVAGVAHEINTPLGVGV 1426 Query: 474 SGSLDLM----RVR-LVQGRA---EELLRYI-------DLAARSTQRAAALTQRLLAFAR 518 +G+ L R++ L Q A +L Y+ L + +RAA L Q A Sbjct: 1427 TGASTLAEETARLKSLFQSGAMKRSDLDAYVGTAGTISKLLLSNMERAATLIQSFKDVAV 1486 Query: 519 RQTLAPRPT-----NVNTLIGGMEELIRRTIG-PAITLEVISAVGLWPTFVDGPQLESAL 572 QT R T ++ ++ + ++RR+ A+ + V +P L + Sbjct: 1487 DQTSEERRTFRLKAYIDEILSNLSPMLRRSEHRVAVDCDEAIEVDTYPG-----ALSQVI 1541 Query: 573 LNLCINA-----RDAMPDGGRLTIETTNKWLDDKWAQERDLPVGQYVCIAVTDNGTGMTP 627 NL +N+ D +P G + I + + + QE D+ + ++++DNG G+ Sbjct: 1542 TNLVMNSLLHAFTDHVP--GEILIVVRSVY---EQGQETDM-----IELSLSDNGQGIPQ 1591 Query: 628 EVMARAFDPFFTTKPIGEGTGLGLSMVYGFARQS-GGQVRLYSELGQGSTVSLYLPR 683 E +A+ FDPFFTT G+GLGL++V+ S GQ+ + S+LG G+T L PR Sbjct: 1592 ENLAKIFDPFFTTTRGRGGSGLGLNIVHNLVTSSLQGQIAVESQLGVGTTFILRFPR 1648 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 108/435 (24%), Positives = 183/435 (42%), Gaps = 52/435 (11%) Query: 400 QTRAAFERIRNQQALAASEARLRQINESLEAEVSARTRELMATEEALRHSQKIEAIGQLT 459 Q A E +++ L A +LR+ NE L S +++ A E+ H Q+ + Sbjct: 48 QGGALHEATQSKHVLEALVVQLREANEHLVLAASG-AQDMQAKAESANHRQE-----EFL 101 Query: 460 GGLAHDFNNLLGGISGSLDLMRVRLVQGR---AEELL-RYIDLAARSTQRAAALTQRLLA 515 LAH+ N L I+ + DL+ G+ A LL + + +R A L L+ Sbjct: 102 SMLAHELRNPLAPIAMAADLL------GKISTAHPLLPKLHGIISRQVSHMAHLVDDLVD 155 Query: 516 FARRQTLAPRPTNVNTLIGGMEELIRRTIGPAI---TLEVISAVGLWPTFVDGP--QLES 570 +R T + L+ + E T P I T ++ ++ + G +L Sbjct: 156 ASRVSTGNITLQKRSLLLAEIIESAVETSQPFIDKRTQQLTISMPDASIIIHGDLVRLAQ 215 Query: 571 ALLNLCINARDAMPDGGRLTIETTNKWLDDKWAQERDLPVGQYVCIAVTDNGTGMTPEVM 630 A NL INA P G + I + V + + D+G G+ ++ Sbjct: 216 AFANLIINATKFTPVDGHIDILVQLQT--------------STVKVVIKDDGVGIAADIQ 261 Query: 631 ARAFDPFFTTKPIG-----EGTGLGLSMVYGFARQSGGQVRLYS---ELGQGSTVSLYLP 682 F+ F P+ G G+GLS+V G V +YS +LG TV L + Sbjct: 262 PYIFE-LFRQGPLSLDRSQGGLGIGLSLVRTVVEMHTGTVSVYSAGADLGSEFTVELPIA 320 Query: 683 RHQHAAQAEECEPAHLPSAAGRGEVVLVVDDEASIRLLLVEVLSEAGYTTLQAEDGPAAL 742 A ++ E P+ A +G +L+++D A+ +L +L+ G+T A DG + L Sbjct: 321 ----AEFIKDDEEGDAPADAIQGCRILLIEDNANANEILSHLLTMEGHTLTSAFDGTSGL 376 Query: 743 RILQSAAQIDLLITDVGLPGGLNGRQVADAAR--TARPGLQVLFITGYAENAALGNGHLQ 800 + + D+++ D+GLP G++G +V R TA+P + I+GY++ N Sbjct: 377 EMAKDNIY-DVIVCDIGLP-GIDGYEVLRRLRLHTAKPVPLCIAISGYSQQENKMNAASV 434 Query: 801 PGMQVLTKPFKMDTL 815 + KP +D L Sbjct: 435 GFDHYMVKPVAIDAL 449 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 13/110 (11%) Query: 564 DGPQLESALLNLCINARDAMPDGG------RLTIETTNKWLDDKWAQERDLPVGQYVCIA 617 D QL + NL NA+DA+ D G R+ I T ++ + D V V + Sbjct: 640 DPTQLRQVIHNLLQNAQDAVADRGEQAAPARIDIIT-----EEIHYRSSDGAVSNAVQLT 694 Query: 618 VTDNGTGMTPEVMARAFDPFFTTKPIGEGTGLGLSMVYGFARQSGGQVRL 667 +TDNG G TP+++A AF+P+ T+KP GTGLGL+MV + GG++ + Sbjct: 695 ITDNGPGFTPKILAHAFEPYITSKP--RGTGLGLAMVKKIIEEHGGRIDI 742 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,913,025 Number of extensions: 81158 Number of successful extensions: 398 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 399 Number of HSP's successfully gapped: 12 Length of query: 830 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 739 Effective length of database: 884,594 Effective search space: 653714966 Effective search space used: 653714966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)