BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0527.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg...   125   3e-30

>gi|152980799|ref|YP_001354172.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 352

 Score =  125 bits (314), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 146/273 (53%), Gaps = 6/273 (2%)

Query: 14  DPEGARSQRGIQSLDSSGALLDALLEAACPLPLGDLARLAGMPAAKAFPHLVSLQKIGLL 73
           D      +RGIQS++    +LD L  A  PLPL  +A  AGM  A    +LVS Q +G++
Sbjct: 81  DASEQSKRRGIQSIEIGFRILDVLRTAGRPLPLRQIAESAGMAVANVHYYLVSFQAVGVI 140

Query: 74  ARDA-QGNFFPGPLSLELGLAALQRLSPLREAEAEVATLAQATGLSVALAVFGPLGPTVV 132
            ++A  G++  GP +L+LG+AAL++      A   +A LA   G +V L V+G  GPT+V
Sbjct: 141 RQEADSGHYGLGPYALKLGMAALEQFDVFTAARPVMAELAATVGHTVFLGVWGNRGPTIV 200

Query: 133 -RLE-ESSRPQHVSLRIGTVLSMVHTAIGRVCAAYLPADMLAGALAMDAIRMEGAQPDSV 190
            R+E  +SRP  + LR+G+VL ++++A+GR   A+LP   + G L    +++      + 
Sbjct: 201 YRIEGGTSRPI-LELRVGSVLPLLNSALGRNFLAHLP-RTITGELLKQELKINLDDKHAP 258

Query: 191 SHPD-GSLRHDYAQRLEQVRTQRLDQALGRPVPGINTLAAPVFNHTGQLALVMAVMGSSG 249
           SH D      D  + L  V+   L +     +P   +L+APVF+H G++   + +MG  G
Sbjct: 259 SHSDLPQSAADIEKMLASVKENGLSRCRDALLPHFTSLSAPVFDHLGEMIAAITLMGPMG 318

Query: 250 SYDPRYEGDVAQLLRAAAHTVSWRLGAFDDTGS 282
             D   +G  A+ L+A A  +S   G   +  S
Sbjct: 319 VLDDDLQGVTAKTLKARALQISQDAGFGKEVAS 351


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,314
Number of extensions: 21766
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)