BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0525.p
         (319 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982004|ref|YP_001352133.1| beta lactamase precursor [Janth...   105   4e-24

>gi|152982004|ref|YP_001352133.1| beta lactamase precursor
           [Janthinobacterium sp. Marseille]
          Length = 341

 Score =  105 bits (262), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 127/283 (44%), Gaps = 34/283 (12%)

Query: 5   FASQADLDAKKITFERISENAYAYTAEGD------------PNSGVIIGDDGVMVIDTTA 52
           F ++  L A  IT   I  + + Y  +G              N+G ++  DGV+V D  A
Sbjct: 35  FGARTALAADDITLRPIKVSPHVYYFQGAAGMASAANKGFMSNAGFVVTKDGVVVFDALA 94

Query: 53  TPAMAQDLIDRIRSVTDLPIKYVVLTHYHAVRVLGASAYFKEGGEQVIASRGTYEMIVER 112
           TP +   ++  I+ +T LP+K V+++HYHA    G  A FK  G +V A         E 
Sbjct: 95  TPVLGGAMLKAIKRITPLPVKRVIISHYHADHFYGLQA-FKAQGAEVWAH--------EN 145

Query: 113 GEADMKSEI--ERF--------PRLFAGVETVPGLTWPTMVFEKEMTIFMGKLEVKIAHL 162
           G A + S++  ER         P +    + VP   W +    K M   MG +  +I   
Sbjct: 146 GRAALSSDLTQERLQQRRKDLAPWVNENTQLVPADRWLSFKDGKVMPFEMGGIHFRIIDS 205

Query: 163 GAGHTKGDTVVWLPGQKVLFSGDLVEYDAACYCGDAQLEQWPGTLDALSALQPEALVPGR 222
              H+  D ++++   KVLF+GDL       + G+A  + W   LD +  ++P  ++PG 
Sbjct: 206 SGAHSPEDIMLYVEEDKVLFAGDLFFTGRIPFVGEANSKVWLEALDRMLEVKPALVIPGH 265

Query: 223 GPALRGPQEVAQGIAYTKDFVSTLLRAGREAVAAKMGLKEAMA 265
           G     P    Q +  T+D++  L +   EAVA  +   EA A
Sbjct: 266 GKMSSQPM---QDMQLTRDYLIFLRKKMGEAVADMVPFDEAYA 305


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 768,130
Number of extensions: 32514
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 236
Effective length of database: 914,170
Effective search space: 215744120
Effective search space used: 215744120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)