BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0522.p (455 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980910|ref|YP_001353544.1| major facilitator transporter [... 349 2e-97 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 89 4e-19 gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 67 2e-12 >gi|152980910|ref|YP_001353544.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 436 Score = 349 bits (895), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/426 (43%), Positives = 270/426 (63%), Gaps = 6/426 (1%) Query: 24 EDAIYRKVWLRIIPFLFLCYVVSFLDRINIGFAQLQMKQDLGFSDAMYGLGAAVFYVGYV 83 ED+IY KV LR++PFLFLCYV ++LDR+N+GFA+L M DL FS+ +YGLGA +F++GY Sbjct: 17 EDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGAGIFFIGYF 76 Query: 84 LCEVPSNMLLARFGARRTFSRIMVLWGLASVGMMAVTDATHFYVLRFLLGVFEAGFFPGI 143 L EVPSN+++ + GARR +RIM+ W + S M VT T FYV+RFLLGV EAGFFPGI Sbjct: 77 LFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVAEAGFFPGI 136 Query: 144 VLYLSYWFPARRRAAVMAIFFAGVAVAGVLGGLVSGWIMRDMAGVMGMYGWQWMFAIEGA 203 VLYL+YWFP RR + A+F G+ +AGV+GG +SGWIM AG+ G +GWQW+F +E Sbjct: 137 VLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQWLFLLEAL 196 Query: 204 PAVVLGVLVIFLLADGPAQASWLSPQERSFLLARHTQETQRSQHVKAHSLTALRHALSHR 263 P++ LG++ +F L + +SWLS E++ L A ++ K+HS+ + ++ Sbjct: 197 PSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGD--KSHSVAGV---FTNP 251 Query: 264 PTYLFAFIYFALTCGSLTLNFWMPLMIRDFGIKDVVQVSLYTVIPNAIGAIGLILIARRS 323 +L A IYF G ++F++P +++ G+KD + V L T IP G I +L+AR + Sbjct: 252 KVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVARSA 311 Query: 324 DRRNERHGHFLFCTTGGALALAALTLHPSSLAVSLGLLSLAAVLIFAALPIFWSLPPGLL 383 DR ER HF + G L L T++ ++ ++L LSL + + +P+FW+ P +L Sbjct: 312 DRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLSTMPVFWTYPSAIL 371 Query: 384 PAQTIAPGIAFISSVGITSGIVSPWLIGLIKTRTGNIDIALYILAGLLLLSGLTMWGLIP 443 A GI I+SVG +G VSP ++G +K TG+ + +Y +AG L+L G + L P Sbjct: 372 GGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGALVL-GACLALLQP 430 Query: 444 RKATQE 449 R + Sbjct: 431 RSLVNK 436 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 180/433 (41%), Gaps = 47/433 (10%) Query: 20 SVAAEDAIYRKVWLRIIPFLFLCYVVSF----LDRINIGFAQLQMKQDLGFSDAMYGLGA 75 +++A D + R FLF+ ++F LD + + +K + G + A G+ Sbjct: 10 AISAADRLERLPICNYHRFLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLG 69 Query: 76 AVFYVGYVLCEVPSNMLLARFGARRTFSRIMVLWGLASVGMMAVTDATHFYVLRFLLGVF 135 + +VG L V S ML +FG + F M++WG+AS D + R LLG+ Sbjct: 70 SASFVGMALGAVSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIG 129 Query: 136 EAGFFPGIVLYLSYWFPARRRAAVMAIFFAGVAVAGVLGGLVSGWIMRDMAGVMGMYGWQ 195 P LS + PA+RR +A+ +A + GL+S + V+ Y W+ Sbjct: 130 MGMELPLAQTLLSEFIPAKRRGKYLALMDGNWPIAFICAGLMSYY-------VLASYSWR 182 Query: 196 WMFAIEGAPAVVLGVLVIFLLADGPAQASWLSPQERSFLLARHTQ--ETQRSQHVKAHSL 253 MF + PAV L V+ ++ P WL + R + E + + +K SL Sbjct: 183 TMFLLGAIPAVFLFVIRRYV----PESPRWLESKGRHAEASNIVDGIEGEVKKILKVDSL 238 Query: 254 TALRHALSHR------------PTY------LFAFIYFALTCGSLTLNFWMPLMIRDFGI 295 + R P Y ++ +FAL G LN W+ +++ G+ Sbjct: 239 PPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLWFFAL-LGFYGLNTWIGALLQQSGL 297 Query: 296 KDVVQVSLYTVIPNAIGAIGLILIARRSDRRNERHGHFLFCTT---GGALALAALTLHPS 352 +V + LYTV G G + A ER G C + GGA+ + S Sbjct: 298 -EVTKSVLYTVYIACGGIPGFLWAAWVV----ERWGRKPACVSTLLGGAVMVFIYGWVAS 352 Query: 353 SLAVSLGLLSLAAVL---IFAALPIFWSLPPGLLPAQTIAPGIAFISSVGITSGIVSPWL 409 S + L+S A++ +F + ++ P L P + A G S+VG ++ P + Sbjct: 353 SAHTFIALVSAGAMMQFFMFGMWAVLYTYTPELYPTRARASGCGMASTVGRLGSLLGPTI 412 Query: 410 IGLIKTRTGNIDI 422 +G+I G I + Sbjct: 413 VGVILPLVGQIGV 425 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 93/408 (22%), Positives = 158/408 (38%), Gaps = 49/408 (12%) Query: 47 FLDRINIG---FAQLQMKQDLGFSDAMYGLGAAVFYVGYVLCEVPSNMLLARFGARRTFS 103 F D +++G F +K + + GL A+ ++G L + ML +FG + F Sbjct: 38 FFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAIAGMLADKFGRKPVFQ 97 Query: 104 RIMVLWGLASVGMMAVTDATHFYVLRFLLGVFEAGFFPGIVLYLSYWFPARRRAAVMAIF 163 M+ WG S+ TD T V R +LG FP + +S PA+ R +AI Sbjct: 98 WSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMVSEIVPAKSRGKYVAIL 157 Query: 164 FA----GVAVAGVLGGLVSGWIMRDMAGVMGMYGWQWMFAIEGAPAVVLGVLVIFLLADG 219 G AG+L L + + GW+ +F PAV + ++ ++ Sbjct: 158 EGFWPLGFIAAGILAYL-----------TLPLIGWRGIFIALSIPAVFVFIVRRYV---- 202 Query: 220 PAQASWLSPQERSFLLARHTQETQR------------------SQHVKAHSLTALRHALS 261 P WL R T + ++ ++ K AL L Sbjct: 203 PESPRWLEEVGRDAEADAVTTKIEKNVIKANGGKPLPTPAPPINEMPKKQDKRALFAELW 262 Query: 262 H-----RPTYLFAFIYFALTCGSLTLNFWMPLMIRDFGIKDVVQVSLYTVIPNAIGAIGL 316 H R L+A +FAL G L W+ +++ G +V + +YTV + G G Sbjct: 263 HGVYAKRTVMLWALWFFAL-LGYYGLTTWLGALLQQAGY-EVTKSVMYTVYISLAGIPGF 320 Query: 317 ILIARRSDR--RNERHGHFLFCTTGGALALAALTLHPSSLAVSLGLLSLAAVLIFAALPI 374 I A ++ R L + A + + +A +G +F + Sbjct: 321 IFSAWLLEKWGRKPTCVLMLVGSACAAYVYGQVATAQAPVAQLIGAGLCMQFFLFGMWSV 380 Query: 375 FWSLPPGLLPAQTIAPGIAFISSVGITSGIVSPWLIGLIKTRTGNIDI 422 ++ P L P ++ A G F SS+G ++ P+ +G+I TG+ + Sbjct: 381 LYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVILPMTGHTGV 428 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,619 Number of extensions: 29823 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 3 Length of query: 455 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 369 Effective length of database: 903,079 Effective search space: 333236151 Effective search space used: 333236151 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)