BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0520.p
         (581 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980896|ref|YP_001353349.1| ABC transport system permease p...   454   e-129
gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica...    60   3e-10

>gi|152980896|ref|YP_001353349.1| ABC transport system permease
           protein [Janthinobacterium sp. Marseille]
          Length = 577

 Score =  454 bits (1168), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/531 (47%), Positives = 347/531 (65%), Gaps = 15/531 (2%)

Query: 55  VDSSPAMIPYYAGRTLLRMWIAFAFSLFFAIGTGYLAAKNRRARALILPALDILQSVPVL 114
           +   PA +PYY  RT+LRM+IA   +L F+     +AAK R A  +++P LDILQSVP+L
Sbjct: 56  ISLDPANLPYYLLRTILRMFIALGCALLFSFVFAAIAAKYRAAEKVMIPTLDILQSVPIL 115

Query: 115 GFLSATVTGFMALFPGSLMGVECAAIFAIFTGQVWNMAFGFYHSMVTIPTDMQEAATTYR 174
           GF +  +  F+A FPGSL+GVECAAIFAIF+ Q WNMAF  Y S+ T+P+++ EAA  +R
Sbjct: 116 GFQAIAIAPFIAFFPGSLLGVECAAIFAIFSSQAWNMAFSLYQSIRTVPSELNEAARVFR 175

Query: 175 LTAWQRFRTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDLKLPGLGSYMAQAI 234
           L+ WQRF  +ELP +   L+WN MMS  GGWFF+  +EAISV N+D+KLPG+G+Y+A AI
Sbjct: 176 LSGWQRFWRLELPYAMPGLLWNMMMSMSGGWFFLVAAEAISVANQDIKLPGIGAYIAVAI 235

Query: 235 DKGDHTAALWAVIAMLALILISDQLVWRPLLAWADKFKIELTESTSPPTSWVYDLLRGSY 294
           +  D  A LWA+ AMLA I++ DQL +RPLLAWADKF+ E ++  +   SW+ +  R S 
Sbjct: 236 EAKDLHAILWAIGAMLAGIVLYDQLFFRPLLAWADKFRFEESQGETEQRSWLLNWGRRSR 295

Query: 295 VFTWLDEKLWTPLGN---WLARHRPATAGNLTPARVARRRWTN--RLISGLIFGLLIFES 349
                 +++W  L +   W +     TA   + ARV    W     ++  L  GL ++  
Sbjct: 296 WMRAGTDRMWAMLRSTLGWFSVSYDGTAPRAS-ARVIHPMWMRVWNVVLLLAAGLAVYR- 353

Query: 350 LRGLVAAIDALHGAMSWSLFGHIVWLGFLTLLRVLAMTVIATLIWTPVGVWIGSKPHIAR 409
             G+      +H  + W+  GH++WLG +TL RVL +  +A+L+W P+ VWIG +P  ++
Sbjct: 354 -LGIF-----VHSEVGWAEVGHVLWLGVITLTRVLLLIALASLVWVPIAVWIGLRPKYSQ 407

Query: 410 FAQPLAQIGASFPVNMTFPLVVGWFVAGNVSMN-WGSILLIAMGTQWYILFNVIAGAMAI 468
             Q LAQ  A+FPVN+ FPLVV   +   ++ N W S L++  GTQWYILFNV+AGA  I
Sbjct: 408 RVQGLAQFLAAFPVNLMFPLVVYLLLTMQLNPNIWLSPLMV-FGTQWYILFNVVAGASTI 466

Query: 469 PNDLKEAARMYGLSRWNLWKTLILPAIFPFWVTGACTAAGGAWNASIVAELANWGDVSLK 528
           PN+L+ A+   GL  W  WK + LPA+FP +VTGA TA+GG+WNASIVAE   WG  +L 
Sbjct: 467 PNELRLASDNLGLKGWLKWKRVYLPAVFPSYVTGAITASGGSWNASIVAEYVTWGKTTLI 526

Query: 529 ADGLGAYISAVTKSGDTPLIIASIGVMSMFVVMMNKFVWRRLYAFAERRFR 579
           ADGLG+YI  +T +GD   I   IGVM +FV+++N+F WR+LY  AE R R
Sbjct: 527 ADGLGSYIKQMTDAGDFHRIALGIGVMCIFVMLLNRFFWRKLYLLAEDRSR 577


>gi|152981435|ref|YP_001354775.1| ABC-type
           nitrate/sulfonate/bicarbonate transport system, permease
           component [Janthinobacterium sp. Marseille]
          Length = 276

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 10/179 (5%)

Query: 379 TLLRVLAMTVIATLIWTPVGVWIGSKPHIARFAQPLAQIGASFPVNMTFPLVVGWFVAGN 438
           ++ RV      A L+  P+G+ IG    I     P  Q+    PV    PL + +F  G 
Sbjct: 83  SVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGP 142

Query: 439 VSMNWGSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARMYGLSRWNLWKTLILPAIFPF 498
            +    +I L+ +G  + I+FN   G  A+ N L EAA M G +  +L++ ++LPA  P 
Sbjct: 143 NA----AIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPS 198

Query: 499 WVTGACTAAGGAWNASIVAELANWGDVSLKADGLGAYISAVTKSGDTPLIIASIGVMSM 557
            + G     G AW   +V E+          +GLGA I        T L+IA + V+ +
Sbjct: 199 ILNGLRLGHGFAWILIVVGEMTG------VPEGLGAVIMDGRMLSRTDLVIAGMVVIGI 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,466,180
Number of extensions: 62210
Number of successful extensions: 309
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 6
Length of query: 581
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 493
Effective length of database: 895,685
Effective search space: 441572705
Effective search space used: 441572705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)