BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0519.p (445 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 264 1e-71 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 171 1e-43 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 166 3e-42 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 154 8e-39 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 152 3e-38 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 246/449 (54%), Gaps = 38/449 (8%) Query: 7 RPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVE 66 R + EL V KS+ TA G VL+ +D + EGE++ALLG+SGSGKST+LR + GL+ Sbjct: 3 RNVLIELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIP 62 Query: 67 PSSGHTMAAGKQLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRA 126 SG M GK +YG ++VFQ+FAL+PWLTV+QNV +GL + ER+ D Sbjct: 63 ADSGSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAM 122 Query: 127 IELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELI 186 ++LIGL + A PRELSGGM+QRVGIAR LV+ P +L +DEAFSALDVLT E LR +++ Sbjct: 123 LDLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDIL 182 Query: 187 SLW---RAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRDSKSP 243 +W R P G I +V+HNIEEAV M+ RIVV+ PGR+ + LP PR+ S Sbjct: 183 EMWEENRIPTKG---ILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRNPDSA 239 Query: 244 EFQRLVNIIHEAITTLSLPDLPPEAHVPGEPISRGRKRMESIPLIPVGQILGLMSLL--- 300 E + L++ ++ +T + P+ G ++ +P V I G++ LL Sbjct: 240 EVRALIDEVYALMTMRT-----PQEATTG--VAVHAHLSYRLPETDVAHIEGVLDLLAAP 292 Query: 301 -----HDEPELNNIYDISDEIGKEFGETIATVKAAEILELVDTPKQEVYLTDLGRRFVAA 355 D PEL + DE E T +A +L L K ++ LT LG + A Sbjct: 293 PFNGRADLPELTEEAKLPDE------ELFPTYEALGLLGLAQVEKGDITLTALGHGYAQA 346 Query: 356 DRKGQRAIFAEQVYKLRIFHIILAV-LGEAEEIE------AERVLKDIGSALPYDNPEKT 408 ++ IF +Q+ + H+ LA + + E E + L + L + E+ Sbjct: 347 AHMRRKEIFGQQL----LTHVPLAAHIRHSLEHEPNGSLSEKHFLNTLEEFLKQEEAERV 402 Query: 409 FETMIAWGRYAGLMDYNAKTGMVFVPKDE 437 E ++ WGRY + +Y+ TG + +P+ + Sbjct: 403 LEVVVEWGRYGEVYEYDYHTGQLKLPESD 431 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 154/258 (59%), Gaps = 5/258 (1%) Query: 2 TTSQQRPAVA-ELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRC 60 T S++RP A ++ VSK ++ GG ++ L ++L +++GE + L+G SG GKST+LR Sbjct: 4 TYSERRPLPAIDIKGVSKVFSI-GGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRI 62 Query: 61 LTGLVEPSSGHTMAAGKQLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERD 120 + G SSG G + G + + +VFQ + L+PWLTV++N+ G N + + + Sbjct: 63 MAGFETTSSGSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLE 122 Query: 121 AAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAEN 180 +++GL + + YP +LSGGM+QRV IAR L + ++L +DE F ALD LT E Sbjct: 123 ELSAYYTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREK 182 Query: 181 LRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRDS 240 L+Q+L+ +W + +T +F VTH +EEAV ++ R+VV+ PGR+ + L PRD Sbjct: 183 LQQDLLEIWER--TKVTVVF-VTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDI 239 Query: 241 KSPEFQRLVNIIHEAITT 258 + EF + I + +T+ Sbjct: 240 TAVEFNEIRRDITQYLTS 257 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 25 GHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKQLYGVNR 84 G V+ ++ L + GE +A++G SG GKST+LR GL+ PSSG QL G R Sbjct: 16 GASAPVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRRR 75 Query: 85 DASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGLGNYHSAYPRELS 144 A VVFQ L PW TV NVA GL + + +E+ + + +A++L GL + +P +LS Sbjct: 76 RA-VVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLS 134 Query: 145 GGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSGLTSIFMVTH 204 GG QRVGIARAL +P LL +DE FSA+D LT NL+ ELI +W+A S ++ VTH Sbjct: 135 GGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQS---AVMFVTH 191 Query: 205 NIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRDSKSPEFQRLV 249 +I+EAV +A R++V+ P + L LP PR F V Sbjct: 192 DIDEAVFLADRVIVLGGSPATVVENLRIDLPRPRVRSDVAFAEYV 236 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 154 bits (390), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 8/225 (3%) Query: 19 SYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKQ 78 S++T G L N++L V +GE + L+G SG GKST+L + GL + + G + ++ Sbjct: 17 SFSTKKG-IFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNRE 75 Query: 79 LYGVNRDASVVFQTFALYPWLTVEQNVAVGL---MSHNPTREERDAAVDRAIELIGLGNY 135 + G + + +VVFQ +L PWLT +NV + + S ++ E A A+ L+GL + Sbjct: 76 IAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHA 135 Query: 136 HSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSG 195 P E+SGGM+QRVGIARAL +PK+L +DE F ALD LT +L+ EL+ + A S Sbjct: 136 EQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGS- 194 Query: 196 LTSIFMVTHNIEEAVEMATRIVVVFPRP-GRLGLVLDNPLPYPRD 239 ++ MVTH+++EAV ++ RIV++ P +G +L+ L PR+ Sbjct: 195 --TVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEVKLARPRE 237 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 134/236 (56%), Gaps = 12/236 (5%) Query: 30 VLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKQLYGV---NRDA 86 V+DNI L++ GE LLG SG GK+T+LR + G P +G + G L GV R Sbjct: 18 VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLDGVDLTGVPPEQRPV 77 Query: 87 SVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGLGNYHSAYPRELSGG 146 VFQ +AL+P +TV N+A L N + E VD A+E + L + + YP ELSGG Sbjct: 78 RTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRLTGFAARYPHELSGG 137 Query: 147 MRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSGLTSIFMVTHNI 206 RQRV IARALV++PKLL LDE SALD E ++ ELI+L + + G+T I+ VTH+ Sbjct: 138 QRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK--EVGITFIY-VTHDQ 194 Query: 207 EEAVEMATRIVVVFPRPGRLGLVLDNP---LPYPRDSKSPEFQRLVNIIHEAITTL 259 EA+ ++ RI V+ G++ LD P YPR +F N+ +T + Sbjct: 195 AEALALSHRIAVM--NKGQVEQ-LDEPTRIYSYPRSRFVADFIGTCNLFDGVVTQI 247 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,051,843 Number of extensions: 44858 Number of successful extensions: 321 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 61 Length of query: 445 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 359 Effective length of database: 903,079 Effective search space: 324205361 Effective search space used: 324205361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)