BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0518.p (547 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 374 e-105 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 347 8e-97 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 340 2e-94 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 336 2e-93 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 335 3e-93 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 374 bits (961), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/530 (44%), Positives = 348/530 (65%), Gaps = 10/530 (1%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNAL 60 M LK+ RL+L FG +++ L+ ++ L F + +NDA++++ + LA+ +++ L Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 61 SQRAIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQ 120 +Q A +RN L+ ++A++Q E + + +A LEK +E G + +A Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERG-----RQTIAG 115 Query: 121 VKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEA 180 ++AD + +PL ++L EAV +L +EVRP Q +++ S+ +L +++++L ++ Sbjct: 116 LQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKS 175 Query: 181 AVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDL 240 A + + L+ +A+L+ V AV RSI R L S+A +AR++A GDL Sbjct: 176 GAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPL----SQAVVLARKVADGDL 231 Query: 241 TATVRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEE 299 T ++ V D + L+ +++ M L I ++ +TI+ AS QIA GN DLS RTE+ Sbjct: 232 TGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQ 291 Query: 300 QAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISAS 359 QA+SLEETA+SMEELT+TV+QN E+A ++ +L+ A++ A G A +VV TM +I+ S Sbjct: 292 QASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDS 351 Query: 360 SGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEI 419 + K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A+KEI Sbjct: 352 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEI 411 Query: 420 KDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAI 479 K+LIG+S+ VS GS LV +AG M E+V SV+R +IM+ I A+QEQ GIEQIN A+ Sbjct: 412 KELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAV 471 Query: 480 VQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRTDASTMAAA 529 +QMDQVTQQNAALVEEA+AAA+SL QAS L +VV VFK+ +T+ A Sbjct: 472 MQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNA 521 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 347 bits (891), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 231/528 (43%), Positives = 321/528 (60%), Gaps = 10/528 (1%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALSQR 63 LK+ TRL +GF L+L + ++A G GM + L I N ++ L + ++ Sbjct: 6 LKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESVHIV 65 Query: 64 AIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQVKA 123 + ++ + L+ +E+ M +E + + Y A LEK A E RE ++K Sbjct: 66 SHSMGTLVLMRNESEMVLEIKKVVDARSKYDAAILVLEKKPALEVERVLRE-----KIKG 120 Query: 124 DENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDEAAVS 183 + + + ++ NK EA +LI P QAW +L + + + N+ AV+ Sbjct: 121 AQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANEADAVA 180 Query: 184 ARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGDLTAT 243 A +TYE + M +AL++GIV A I RSI R + + A ++A +A GDLT+ Sbjct: 181 ATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIIS----AMNVANTVALGDLTSH 236 Query: 244 VRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTEEQAA 302 + + D S L+ +++ M L I ++ ETI+ AS +IA GN DLS RTEEQA+ Sbjct: 237 IEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQAS 296 Query: 303 SLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISASSGK 362 SLE+TA+SMEELT+TV+ N ++A +A +L+ A+ A+ G +VV TM I+ SS K Sbjct: 297 SLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSSRK 356 Query: 363 MADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIKDL 422 ++DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ A+K+I+ L Sbjct: 357 ISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIRIL 416 Query: 423 IGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTAIVQM 482 IG S+ + AGS LV AG M EIV SVQ+ IM I A++EQ +GIEQ+N AI QM Sbjct: 417 IGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIAQM 476 Query: 483 DQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRTDASTMAAAS 530 DQVTQQNAALVEEA+AAA SL +QA L KVV VFK+ M AS Sbjct: 477 DQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQHMMPMAS 524 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 340 bits (871), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 235/538 (43%), Positives = 337/538 (62%), Gaps = 24/538 (4%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNAL 60 M LK+ RLAL FG ++ L+ ++ + F + +++ A+ ++ + A +++ L Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 61 SQRAIAIRNIALLEDEASMQVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLAQ 120 ++ A +RN L+ D A ++ E T+ + A+A L++ +E G T Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRT--------Y 112 Query: 121 VKADENAT---VPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLN 177 +KA +A P+ K + L + AEA +L +EVRP Q ++ L L EF+ L Sbjct: 113 IKALTDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLM 172 Query: 178 DEAAVSAR----STYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAR 233 +A A + + + L + ++ ++ +G +A RSI R L S+A +AR Sbjct: 173 HKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLAT----RSITRPL----SQAVGLAR 224 Query: 234 EIASGDLTATVRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFD 292 ++A GDLT T+ V D + L+ +++ M L I ++ +TI+ AS QIA GN D Sbjct: 225 KVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLD 284 Query: 293 LSQRTEEQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVST 352 LS RTEEQA+SLEETA+SMEELT+TV+QN ++A ++ +L+ A++ A G A +VV T Sbjct: 285 LSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVET 344 Query: 353 MDKISASSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 412 M I+ S+ K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 345 MGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 404 Query: 413 AVASKEIKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGI 472 A A+KEIK LI +S+ V+ GS LV +AG M+E+V SV+R +IM I A+QEQ GI Sbjct: 405 ASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGI 464 Query: 473 EQINTAIVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRTDASTMAAAS 530 EQIN A++QMDQVTQQNAALVEEA+AAA+SL QA+ L +VVSVFK+ +A + A S Sbjct: 465 EQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQATS 522 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 336 bits (862), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 234/521 (44%), Positives = 323/521 (61%), Gaps = 18/521 (3%) Query: 4 LKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNALS-- 61 LK+ TRL+ GF L+L ++ ++ +G + V + +T+ + +LA +A+ Sbjct: 6 LKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDVN 65 Query: 62 -QRAIAIRNIALLEDEASMQVEA-QTLARQEKLYADAYTALEKMFATEAGTTEREHKLLA 119 R +A ED+A Q + +T R +L + +E M T + +L Sbjct: 66 GARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKE----IESMI-----KTPEDKRLFE 116 Query: 120 QVKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDE 179 ++ NA + +L E K EA ++ ++ P A+ S+ + + E +L DE Sbjct: 117 ELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDE 176 Query: 180 AAVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGD 239 A S +S + R+L++ +A A+ +G+ A +A SI R L + A ++AR +ASGD Sbjct: 177 AGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPL----NRAVTVARTVASGD 232 Query: 240 LTATVRVRVGDGSS-LMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTE 298 L+A + V D + LM +++ M LN ++S ETI+ AS QIA GN DLS RTE Sbjct: 233 LSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTE 292 Query: 299 EQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISA 358 EQA+SL ETAASM +LT+TVRQN ++A +A L+ A+ A G + VV TM I+ Sbjct: 293 EQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINE 352 Query: 359 SSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKE 418 S+ K+ DIISVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A+KE Sbjct: 353 SARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 412 Query: 419 IKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTA 478 IK LIG+S+ V AGS+LV AG M+EIV SV+R +IM I A+QEQ SGI+Q+N A Sbjct: 413 IKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQA 472 Query: 479 IVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 I QMDQVTQQNAALVEEA+AAA+SL QA L +VVS FK+ Sbjct: 473 IGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 335 bits (860), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 218/531 (41%), Positives = 333/531 (62%), Gaps = 13/531 (2%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISALGFYGMSRVNDALTDITRVNNAEIKLASALRNAL 60 + +K+ +L L FG++ L+ I+ L + ++N+++ I++ + LA++++ + Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 61 SQRAIAIRNIALLEDEASM-QVEAQTLARQEKLYADAYTALEKMFATEAGTTEREHKLLA 119 ++ A+ +R+I L D A + Q+ + T A +K+ LE++ A TE +++ ++ Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMN----EGLEQLRAV--AQTEEDNRYVS 117 Query: 120 QVKADENATVPLMAKALQLGLENKPAEAVKVLISEVRPKQQAWITSLTELSEFEDQLNDE 179 + VP LQL + K AEA L P Q + +L + +++ L + Sbjct: 118 AAIVARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNV 177 Query: 180 AAVSARSTYEWLRTLMLTSIALALLVGIVAAVTIARSILRQLGAEPSEAQSIAREIASGD 239 A +A +T RT++ ++LL+ I + RSI R L + A +AR +A GD Sbjct: 178 AGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPL----NTAVGVARRVAQGD 233 Query: 240 LTATVRVRV-GDGSSLMASIEQMRYQLNVIAYGIKSAAETISVASGQIAQGNFDLSQRTE 298 L+ V V+ + LMA+++ M L+ I +++ TI+ ASG+IA+GN DLS RTE Sbjct: 234 LSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTE 293 Query: 299 EQAASLEETAASMEELTTTVRQNTEHAAEALRLSGGAAQTATSGSAAFDRVVSTMDKISA 358 +QA+SLEETA++MEELT+TVR+N ++A +A +L+ A + A G + V++TM I+ Sbjct: 294 QQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINT 353 Query: 359 SSGKMADIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKE 418 SS K+ADI VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A+ E Sbjct: 354 SSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAME 413 Query: 419 IKDLIGESMSHVSAGSELVANAGHQMSEIVASVQRFGEIMNNIATATQEQGSGIEQINTA 478 IK LI +S++ V GS+LV AG + E+V SV I+ I+ A+QEQ +GIEQ+ A Sbjct: 414 IKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQA 473 Query: 479 IVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-RTDASTMAA 528 IVQ+D+ TQQNAALVE+++AAAQSL +QA L+++VS+FK+ R +T AA Sbjct: 474 IVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSAA 524 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 786,538 Number of extensions: 23164 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 21 Length of query: 547 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 459 Effective length of database: 895,685 Effective search space: 411119415 Effective search space used: 411119415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)