BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0516.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 126 1e-30 gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 114 9e-27 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 83 3e-17 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 21/309 (6%) Query: 5 DLNLLIALDALIAQASVAGAARRLGLSASAMSRTLTRLRQATGDPLLVRAGRQMVLTPCA 64 DLNLL DA++ + ++ AA L ++ A+S L RLR GD L++R + T A Sbjct: 7 DLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPTSRA 66 Query: 65 EALRERVRNVVHEARSVLRPSVPELDLARLERDFTLRANEGFIEACGAALIDAVTTEAPL 124 E L VR + + + + P D++R F + + L+ A+ +AP Sbjct: 67 EELWPVVRRALSDLEAAVTPDT--FDVSRANTTFRMAMADATAALWLPFLVRAIEKDAPG 124 Query: 125 VRLRFAPKVERSPLP-LREGSADLEIGM-----------ANEMGPEVRLQTLFRDRFVGA 172 + +R P R P P L G DL IG N ++R + L+ +V Sbjct: 125 LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVCV 184 Query: 173 VRIGHPLASLRRVTAERYCACQHVSASPRGDTSSPLDAALAERGLTRKVVAVVPSYPGAL 232 +R HPLA + +T + YCA H+ S G +D AL G R+++ V + A Sbjct: 185 MRKNHPLAKV-ELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFFTAG 243 Query: 233 AIVRASDLVTIVPSSFLTTAGAPRTDGSASGIHRFELPVVTEPIIVSLMWHPRVELDPAH 292 +V +SDL+T++P + + G A + +LP + V ++WH R +PAH Sbjct: 244 RVVASSDLITVLPRHLIASTGM------AEALIAKDLPFELPDVHVDMLWHERDARNPAH 297 Query: 293 RWLRDKVRA 301 +WLR+++ A Sbjct: 298 KWLREQLSA 306 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 114 bits (285), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 136/298 (45%), Gaps = 15/298 (5%) Query: 5 DLNLLIALDALIAQASVAGAARRLGLSASAMSRTLTRLRQATGDPLLVRAGRQMVLTPCA 64 DLNLL+A DA++ + +V AA RLG+S AMS L RLR DPL VR + M TP A Sbjct: 7 DLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQPTPYA 66 Query: 65 EALRERVRNVVHEARSVLRPSVPELDLARLERDFTLRANEGFIEACGAALIDAVTTEAP- 123 E L E V S L+ + D A + F+ E L+ + AP Sbjct: 67 EQLIEPVSRACELITSALQIN-SVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVAAPN 125 Query: 124 -LVRLRFAPKVERSPLPLREGSADLEIGMANEMGPEVRLQTLFRDRFVGAVRIGHPLASL 182 VR+R P+ + + + G DL +G+ + Q L+ D+F VR GHP Sbjct: 126 ACVRVRRIPE-QGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGHPTVH- 183 Query: 183 RRVTAERYCACQHV---SASPRGDTSSPLDAALAERGLTRKVVAVVPSYPGALAIVRASD 239 +T ++Y HV SA+ D + ++ L L RK+V ++ I+ +D Sbjct: 184 DSLTPQQYVDTPHVIVMSANTGHDAA--IEKILLTEHLRRKIVMTSQNFLVLPMIIEQTD 241 Query: 240 LVTIVPSSFLTTAGAPRTDGSASGIHRFELPVVTEPIIVSLMWHPRVELDPAHRWLRD 297 + +P A + ++GI E P+ + + WH R DPA++W+RD Sbjct: 242 AIATIPFRM-----AQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRD 294 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 25/315 (7%) Query: 5 DLNLLIALDALIAQASVAGAARRLGLSASAMSRTLTRLRQATGDPLLVRAGRQMVLTPCA 64 D++L+ L L+ + +V+ A +L ++S +L +LR+ TGDPLLVR R MV T Sbjct: 9 DIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQHG 68 Query: 65 EALRERVRNVVHEARSVLRPS---VPELDLARLERDFTLRANEGFIEACGAALIDAVTTE 121 E+L + + ++ EA + P VP+ D A R F + A + +I + E Sbjct: 69 ESLMKSAKRILDEAEHLFIPKTAFVPQ-DEA---RTFHIAAPDYMNTQFFTEVIARLRRE 124 Query: 122 AP---LVRLRFAPKVERSPLPLREGSADLEIGMANEMGPEVRLQTLFRDRFVGAVRIGHP 178 +P +V P + L L +G DL I +EM + + LF D V +R Sbjct: 125 SPKSHIVIHALGPDTDYVRL-LSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRSD-- 181 Query: 179 LASLRR-----VTAERYCACQHVSASP-RGDTSSPLDAALAERGLTRKVVAVVPSYPGAL 232 A +R +T E Y + H + S +D L ++ L R +V + Sbjct: 182 CAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLP 241 Query: 233 AIVRASDLVTIVPSSFLTTAGAPRTDGSASGIHRFELPVVTEPIIVSLMWHPRVELDPAH 292 +V +DLV F T+ +T S + +P+ P+ +WH RV H Sbjct: 242 YMVEKTDLVLTAGQQF--TSFYEKTLSLKS----YTVPIKFPPLRFYQLWHERVHQATEH 295 Query: 293 RWLRDKVRAVCATLA 307 +WLR +V A L+ Sbjct: 296 KWLRAQVCAAAKVLS 310 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 668,436 Number of extensions: 27130 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 3 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)