BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0514.p
         (627 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980582|ref|YP_001353231.1| hypothetical protein mma_1541 [...    82   1e-16

>gi|152980582|ref|YP_001353231.1| hypothetical protein mma_1541
           [Janthinobacterium sp. Marseille]
          Length = 390

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 20/209 (9%)

Query: 176 GPIGQAGIVLVLLVFILLEQESLRERLIRLAGLTEMSR--TMQALGDAAEGVSRFFFSQF 233
           G +GQA +V+ L+ F L   +  R +L++++G +  +R  T+Q L      +  + F   
Sbjct: 191 GFLGQATMVMFLVFFFLQSGDMFRRKLVKISGHSLHTRKITVQILDAINTSIQNYMFMLL 250

Query: 234 VVNLVFGLTMGIVLAAGGVPHAVLWGTLAGVLRFVPYLGALASGLMISVFIAAIDPGWWL 293
           V N++FGL M   L   G+ +A  W   AG+L  +PY G L   +M +  + A       
Sbjct: 251 VTNVLFGLLMWGALRWIGLENAGAWALAAGILHIIPYFGPLL--IMAATGVTAF------ 302

Query: 294 ALSFLAFYVGLEV---------IVSNFVEPRIYGHSSGLSPLAVIVSALFWGSLWGPIGL 344
            + F  F   L V         +V  FV   + G  + ++ +AV VS LFW  LWG  G+
Sbjct: 303 -MQFGTFSSVLAVGGATLLIATVVGTFVTTWMTGRIAKMNAVAVFVSLLFWAWLWGICGM 361

Query: 345 LLSTPLTLCLVVAGRHVAALEPITILLGE 373
           LL  P+ + + V   HV  L+ +  LLGE
Sbjct: 362 LLGIPIIVIIKVISEHVDGLQVVAELLGE 390


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,224,044
Number of extensions: 45625
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 2
Length of query: 627
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 538
Effective length of database: 891,988
Effective search space: 479889544
Effective search space used: 479889544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)