BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0513.p (620 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Jan... 387 e-108 gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [J... 180 2e-46 >gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Janthinobacterium sp. Marseille] Length = 557 Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/613 (37%), Positives = 346/613 (56%), Gaps = 68/613 (11%) Query: 5 RSHTTTQGRNMAGARALWRATGMKDGDFNKPIIAVVNSFTQFVPGHVHLKDLGQLVAREI 64 RS TQG + + R+++ A G + DF+KP++ V N + P + L+ L + + I Sbjct: 6 RSKNITQGISRSPNRSMYYAMGYEKEDFDKPMVGVANGHSTITPCNSGLQKLADIAIKTI 65 Query: 65 EAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDLIADSVEYMVNAHCADAMVCISNCDK 124 + +GG + F T + DG++MG +GM YSL SR++IAD +E VN D ++ I CDK Sbjct: 66 KDSGGNPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAVNGQWMDGVLVIGGCDK 125 Query: 125 ITPGMLMAAMRLNIPVIFVSGGPMEAGKVIKTVNTDKKIIKLDLVDAMIQAGD---QNIS 181 PG ++A +R N+P I+V GG ++ G + K L +V A G+ +S Sbjct: 126 NMPGGMIAMLRTNVPSIYVYGGTIKPG--------NWKGKDLTIVSAFEAVGEFTAGRMS 177 Query: 182 DADVAEVERSACPTCGSCSGMFTANSMNCLTEVLGLSLPGNGTIVATHADRKELFLRAGR 241 D +ER+ACP+ GSC GM+TAN+M+ E LGL+LP + T+ ++ + R Sbjct: 178 QEDFDGIERNACPSAGSCGGMYTANTMSSSFEALGLALPYSSTMANPDDEKVGSAAESAR 237 Query: 242 LIVELAKRHYEEDDYTILPRNIATKETWENAMTLDVSMGGSTNTVLHLLAAAHEAKVEFT 301 +++E K + PR+I T++ ENA+ + ++ GGSTN VLH LA AH A+VE+T Sbjct: 238 VLIEAIKNDLK-------PRDIVTRKAIENAVAVIMATGGSTNAVLHFLAIAHAAEVEWT 290 Query: 302 MADIDRISRKVPCLCKVAPMTNKYHIEDVHRAGGIIAILGELARAGLLDTSRPTVHSKTL 361 + D +R+ +KVP +C + P + KY D+H+AGGI ++ L AGLL T+ +T+ Sbjct: 291 IDDFERMRKKVPVICDLKP-SGKYVATDLHKAGGIPQVMKVLLDAGLLHGDCMTITGQTV 349 Query: 362 GEAIEKYDIRVTSDAEVHKLFRAAPGGVPTQVAFSQQERFADSDLDRANGCIRDREHAYS 421 EA+ +D V I + A Sbjct: 350 AEALAHIPSVPRADQHV----------------------------------IHPIKDALY 375 Query: 422 QDGGLAVLYGNIAEKGCIVKTAGVDESILKFSGTARVFESQDAAVEGILGDQVKAGDVVI 481 + G LA+L GN++ +GC+ K G+ ++ +G ARVF+ + +A++ I+ +++ AGDV++ Sbjct: 376 EQGHLAILKGNLSPEGCVAKITGLKNPVI--TGPARVFDDEYSAMDAIMANKIVAGDVLV 433 Query: 482 VRYEGPKGGPGMQEMLYPTSYIKSKGLGKACALFTDGRFSGGSSGLVIGHASPEAAEGGA 541 +RY GPKGGPGM EML PTS + +GLG++ L TDGRFSGG+ G+V+GH SPEA GG Sbjct: 434 MRYLGPKGGPGMPEMLAPTSALVGQGLGESVGLITDGRFSGGTWGMVVGHVSPEAFVGGL 493 Query: 542 IGLVQEGDLIDIDIPNRSINLRVTAEELAQRRAAMEALGDAAWK-PANR-TRVVSQALQA 599 IGLV+EGD + ID I L V EE+A+RR A WK PA R TR V L Sbjct: 494 IGLVEEGDSVTIDAHKLLIQLNVPEEEIARRR--------ANWKQPAPRYTRGV---LSK 542 Query: 600 YAALTTSADRGAV 612 +AAL +SA +GAV Sbjct: 543 FAALASSASKGAV 555 >gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [Janthinobacterium sp. Marseille] Length = 642 Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 160/551 (29%), Positives = 252/551 (45%), Gaps = 64/551 (11%) Query: 35 PIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTI-AVDDGIAMGHDGMLYS 93 P IA+V+++ + H + ++ + AGGVA+ + A+ DGI G GM S Sbjct: 68 PSIAIVSAYNDMLSAHQPFERFPHIIKDAVRKAGGVAQFAGGVPAMCDGITQGQPGMELS 127 Query: 94 LPSRDLIADSVEYMVNAHCADAMVCISNCDKITPGMLMAAMRL-NIPVIFVSGGPMEAGK 152 L SRD IA S ++ + DA + + CDKI PG+++ A+ ++P +FV GPM +G Sbjct: 128 LFSRDTIAMSTAIALSHNMFDAALYLGVCDKIVPGLVIGALHFGHLPAVFVPAGPMTSGM 187 Query: 153 V------IKTVNTDKKIIKLDLVDAMIQAGDQNISDADVAEVERSACPTCGSCSGMFTAN 206 I+ + KI + DA+++A Q+ DA G+C+ TAN Sbjct: 188 SNPEKAKIRQLYAQGKIGR----DALLEAEGQSYHDA-------------GTCTFYGTAN 230 Query: 207 SMNCLTEVLGLSLPGNGTIVATHADRKELFLRAGRLIVELAKRHYEEDDYTILPRNIATK 266 S L EV+GL LPG I R L A + VE++ + +T + R + + Sbjct: 231 SNQMLMEVMGLHLPGAAFITPNTPLRDALTAHAAQRAVEISA---QGKSFTPIGR-LVDE 286 Query: 267 ETWENAMTLDVSMGGSTNTVLHLLAAAHEAKVEFTMADIDRISRKVPCLCKVAPMTNKYH 326 +T NA+ ++ GGSTN LHL+A A A + D D +S P + ++ P Sbjct: 287 KTIVNAVVALLATGGSTNHTLHLVAMAKAAGIVIDWNDFDALSAIAPLVARIYP-NGDAD 345 Query: 327 IEDVHRAGGIIAILGELARAGLLDTSRPTVHSKTLGEAIEKYDIRVTSDAEVHKLFRAAP 386 + H AGG ++ EL AGLL T+ LG + + A P Sbjct: 346 VNHFHAAGGTGFVIRELLDAGLLHDDVLTI----LGRGLRAH--------------AAEP 387 Query: 387 GGVPTQVAFSQQERFADSDLDRANG---CIRDREHAYSQDGGLAVLYGNIAEKGCIVKTA 443 F Q E+ +G +R +S DGG+ +L GN+ V Sbjct: 388 --------FLQGEQVVWQPAASVSGNTDVLRTAADPFSGDGGMKLLSGNLGRAVVKVSAV 439 Query: 444 GVDESILKFSGTARVFESQDAAVEGILGDQVKAGDVVIVRYEGPKGGPGMQEMLYPTSYI 503 V I++ A VF+SQ+A + ++ + ++R++GP+ GM E+ T + Sbjct: 440 KVQHRIVR--APAIVFDSQEAFMHAYQAGELNRDFIAVLRHQGPRAN-GMPELHALTPAL 496 Query: 504 KS-KGLGKACALFTDGRFSGGSSGLVIG-HASPEAAEGGAIGLVQEGDLIDIDIPNRSIN 561 S + G+ AL TDGR SG S + H SPE GG +G V++GD+I+++ + Sbjct: 497 GSLQDAGRHVALVTDGRMSGASGKVPAAIHVSPEVLAGGPLGRVRDGDIIELNAETGVLQ 556 Query: 562 LRVTAEELAQR 572 V E A R Sbjct: 557 ALVPEAEWAAR 567 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,471,761 Number of extensions: 63070 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 4 Length of query: 620 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 531 Effective length of database: 891,988 Effective search space: 473645628 Effective search space used: 473645628 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)