BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0510.p
         (309 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983103|ref|YP_001353457.1| cobalt-zinc-cadmium resistance ...    58   9e-10

>gi|152983103|ref|YP_001353457.1| cobalt-zinc-cadmium resistance
           protein CzcD [Janthinobacterium sp. Marseille]
          Length = 316

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 32  LVSIVVNIGLVLLQVTAGVLSGSQALIADGIHSLSDLISDFVVLLAGHHSRKQADDDHQY 91
           L++ V+    ++ +V  G+++GS AL++D  H L+D  +  + L+A   +++ AD    +
Sbjct: 19  LIAFVLTSTFLVAEVIGGLVTGSLALLSDAAHMLTDASALAIALIAIQIAKRAADSRRTF 78

Query: 92  GHQRYENAASLALGALLLAVGLGMLVTAAQKIQHYGHTPPVHVAALWVALVALLAKELLF 151
           G+ R+E  A+     +L  V + +L  A ++ +      P+ + ++ + ++A L   +  
Sbjct: 79  GYHRFEILAASFNAIMLFFVAMYILYEAYRRFK-----SPIEIQSMGMLIIASLGLIINL 133

Query: 152 RYMLRIAQRVRSSMLVANAW-HARSDAASSL-VVALGIVGSLAGFTLLDPVAAAVVGLMV 209
             M  ++    +S+ +  A+    SD   S+ V+A  ++    G+T +D V A  +G  V
Sbjct: 134 ISMKLLSSGKDASLNIKGAYLEVWSDMLGSVGVIAGALIIRFTGWTWVDSVIAVGIGFWV 193

Query: 210 VRTGWGFFWSALHDLMDRAVSAEEAQAIRATILATPGVHGLHDL 253
           +   W     +++ L++      + + +R ++    GV  +HDL
Sbjct: 194 LPRTWILLRESINVLLEGVPEHIDLEKLRKSVSDIAGVRSIHDL 237


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 618,151
Number of extensions: 22611
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 226
Effective length of database: 914,170
Effective search space: 206602420
Effective search space used: 206602420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)