BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0507.p (282 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 151 4e-38 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 85 5e-18 gi|152980095|ref|YP_001353263.1| LysR family transcriptional reg... 76 3e-15 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 68 6e-13 gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 68 6e-13 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 133/255 (52%), Gaps = 1/255 (0%) Query: 1 MLNPVWLQTFATAASASSFTEAGRQLGLTQSTVSDHIRRLEDSLGRRLFVRDTHSLALTA 60 ML+P+ L++F SFT A + LTQSTVS IRRLE+ L R +A T Sbjct: 1 MLDPILLRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTP 60 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 +GESLL +AR ILQ A Q + +G ++ G +D A L +LAAF +P + Sbjct: 61 EGESLLGYARRILQLMDEAVEQVTQSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIR 120 Query: 121 LEITIGLTSDLYAALEQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLSEPLPL 180 LEIT GL+ DLY +QGKLDL + K+R + G + + P+ W+ + L +P+PL Sbjct: 121 LEITSGLSHDLYRMFQQGKLDLALVKQRKDSAPGIASWPEPLCWVDSLNRPAALRDPVPL 180 Query: 181 ILLPEPSITRAATLQALGKSGHHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 + P + R AL G WRI S S A AA + GLG++ LP+ +A Sbjct: 181 VAFPIGGLYRNEMTHALDAIGRRWRIGFVSTSLASVSAAVQDGLGISLLPRRMAQAGQHK 240 Query: 241 PLNHA-ALPRLPDVE 254 L A LPD+E Sbjct: 241 VLGAADGFAGLPDLE 255 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 84.7 bits (208), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 31/243 (12%) Query: 7 LQTFATAASASSFTEAGRQLGLTQSTVSDHIRRLEDSLGRRLFVRDTHSLALTADGESLL 66 L+ F A SF A + QS V+ HI++LED +G +L R T + +A G +L+ Sbjct: 6 LRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGTPARPSSA-GFALM 64 Query: 67 VHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVELEITIG 126 +A ++QAH A A F + G +R G + LP +L F + HPEV+L++T G Sbjct: 65 AYAERMIQAHDEALALFKNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPEVDLKLTTG 124 Query: 127 LTSDLYAALEQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLSEPLPLILLPEP 186 T+ L A L +G+ D + AG+ ++ Q+ + LV +S P+ +P Sbjct: 125 PTAKLVAGLNEGRFDCVF---IAGKLENPRLY----QYKAYREELVLVSAS-PMKSMPSA 176 Query: 187 SITRAATLQALGKSGHHWR-----IVCTSGSHA-------------GCMAAARGGLGLAA 228 RA+T G+ G +R ++ SG + GC+ A G+G A Sbjct: 177 DTLRASTFLVFGQ-GCSYRQRVDVLLADSGVFSSRMVDFGSLDAILGCVGA---GMGYAL 232 Query: 229 LPQ 231 +P+ Sbjct: 233 MPK 235 >gi|152980095|ref|YP_001353263.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 7 LQTFATAASASSFTEAGRQLGLTQSTVSDHIRRLEDSLGRRLFVRDTHSLALTADGESLL 66 L F AA + A R+L + + S ++RLE +LG RLFVR T SL LT DGE L Sbjct: 9 LMLFVRAADCGGLSAAARELDIAPAAASAALKRLEAALGARLFVRSTRSLRLTTDGERYL 68 Query: 67 VHARLILQAHARAEAQFS--APRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVELEIT 124 VHAR +L A A + A + G + DL + L F++QHP + L I Sbjct: 69 VHARAVLLAVDEGAASVARDAQTIGGDLSLSIPSDLGRNVMLPWLDEFQAQHPAIRLRIR 128 Query: 125 IGLTSDLYAALEQGKLDLLVGKRRAGESRGHSMFSTPM 162 I SD A L + +D+ + R GE M + P+ Sbjct: 129 I---SDRLADLYRQTIDVAI---RYGEPEDSGMVALPL 160 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 30/271 (11%) Query: 6 WLQTFATAASASSFTEAGRQLGLTQSTVSDHIRRLEDSLGRRLFVRDTHSLALTADGESL 65 L+ F A T+A +++G+ Q +S IR LE LG LF R + LT G++L Sbjct: 8 LLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESGQAL 67 Query: 66 LVHARLIL-QAHARAEAQFSAPRL----RGRVRFGTSDDLAMGP-LPDMLAAFRSQHPEV 119 L+ ARLIL Q + E R+ GR+ G ++ A+ P +P ++ AFR + P V Sbjct: 68 LIDARLILEQVNTTIEG---VRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGV 124 Query: 120 ELEITIGLTSDLYAALEQGKLDLLVGKRRAGESRGHSMFSTPMQWLTR--PDT--LVDLS 175 + + T++L L +LD+ + G + G M + ++ + P T L Sbjct: 125 IMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQRR 184 Query: 176 EPLPLILLPEPSIT----------RAATLQALGKSGHHWRIVCTSGSHAGCMAAARGGLG 225 + LPL L E + + A +G R+V + + ++ GLG Sbjct: 185 KSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAAGLG 244 Query: 226 LAALP---QHLASRDLVVPLNHAALPRLPDV 253 ++ +P +H+ +++V + L + PD+ Sbjct: 245 VSIVPASMRHVQLKEVV----YLKLEQAPDL 271 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 25/278 (8%) Query: 7 LQTFATAASASSFTEAGRQLGLTQSTVSDHIRRLEDSLGRRLFVRDTHSLALTADGESLL 66 L+TF A SF+ R+LG TQSTVS I +E + LF R T LTA G+ LL Sbjct: 8 LETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPTLTAAGQKLL 67 Query: 67 VHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVELEITIG 126 + A +++ EA + + ++ + +L+AF ++ P ++L I Sbjct: 68 IEAEAVMERCIALEAHADSLGDSNPAELTLAIEIPYNTVMPVLSAFEAEFPFIDLTIRNP 127 Query: 127 LTSDLYAALEQGKLDLLVGKRRAG---ESRGHSMFSTPMQWLTRPDTLVDLSEPLPLILL 183 + D+ + +G++DL + + G E + M +T PD PL + Sbjct: 128 VYGDVSELVLKGEVDLGIAFAQPGYPSELNFTQLGRLVMVHITHPDH--------PLAKI 179 Query: 184 PEPSITRAATLQALGKSGHHWRI----------VCTSGSHAGCMAAARGGLGLAALPQHL 233 + S + + L S H ++ V + S+ + R GLG A LP+ L Sbjct: 180 EKVSFSDLHIHRHLAFSAHANKLPTTEYLRATKVWQAESYLALIEMVRAGLGWATLPRQL 239 Query: 234 ASRDL----VVPLNHAALPRLPDVEYVALTARRLSRPA 267 R+L +V L A P + V L ++ +PA Sbjct: 240 IHRELEQGDLVELQLEAYPYTDWLVGVDLLWQKRRQPA 277 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 551,843 Number of extensions: 19267 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 23 Length of query: 282 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 200 Effective length of database: 917,867 Effective search space: 183573400 Effective search space used: 183573400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)